Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2481577

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2481577


Profile download
7010000000000000000000-769Sequence Read ArchiveSRP074598SRP074598_M50Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeZygoteHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000213370 RANP6 RAN pseudogene 6 3.9285 0.0000
2 ENSG00000229570 GAPDHP58 glyceraldehyde 3 phosphate dehydrogenase pseudogene 58 3.4594 0.0000
3 ENSG00000265442 MIR3941 microRNA 3941 3.4594 0.0000
4 ENSG00000275426 novel transcript 3.4594 0.0000
5 ENSG00000134200 TSHB thyroid stimulating hormone subunit beta 3.3900 0.0000
6 ENSG00000240553 novel transcript 3.3219 0.0000
7 ENSG00000218730 A kinase (PRKA) interacting protein 1 (AKIP1) pseudogene 3.2459 0.0000
8 ENSG00000175509 ACRP1 ACR pseudogene 1 3.2210 0.0000
9 ENSG00000233479 novel transcript 3.2210 0.0000
10 ENSG00000227014 FKBP14-AS1 FKBP14 antisense RNA 1 3.2190 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63173 ENSG00000013392 RWDD2A RWD domain containing 2A -2.3564 0.0000
63172 ENSG00000215878 MARCKSL1P2 MARCKS like 1 pseudogene 2 -2.3560 0.0000
63171 ENSG00000236296 GUSBP5 GUSB pseudogene 5 -2.3559 0.0000
63170 ENSG00000200536 NA -2.3555 0.0000
63169 ENSG00000264408 MIR4470 microRNA 4470 -2.3547 0.0000
63168 ENSG00000233153 UBE2E2-AS1 UBE2E2 antisense RNA 1 (head to head) -2.3541 0.0000
63167 ENSG00000239419 RN7SL535P RNA, 7SL, cytoplasmic 535, pseudogene -2.3536 0.0000
63166 ENSG00000283291 5.8S ribosomal RNA -2.3531 0.0000
63165 ENSG00000080224 EPHA6 EPH receptor A6 -2.3526 0.0000
63164 ENSG00000182674 KCNB2 potassium voltage-gated channel subfamily B member 2 -2.3523 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

full download

Now loading...