Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2481578

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2481578


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7010000000000000000000-769Sequence Read ArchiveSRP074598SRP074598_M51Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeZygoteHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000259906 novel transcript 2.8074 0.0000
2 ENSG00000219902 RPL35P3 ribosomal protein L35 pseudogene 3 2.5850 0.0000
3 ENSG00000277879 novel transcript, antisense to SLC18A2 2.5850 0.0000
4 ENSG00000234261 novel transcript 2.5382 0.0000
5 ENSG00000243986 ENO1P3 enolase 1 pseudogene 3 2.4875 0.0000
6 ENSG00000271917 novel transcript 2.4534 0.0000
7 ENSG00000236646 LAMTOR5P1 late endosomal/lysosomal adaptor, MAPK and MTOR activator 5 pseudogene 1 2.4271 0.0000
8 ENSG00000185899 TAS2R60 taste 2 receptor member 60 2.3219 0.0000
9 ENSG00000201780 RNU6-275P RNA, U6 small nuclear 275, pseudogene 2.3219 0.0000
10 ENSG00000226438 novel transcript 2.3219 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63173 ENSG00000255535 similar to ribosomal protein L10 (RPL10) pseudogene -1.7345 0.0052
63172 ENSG00000254279 IGHVII-1-1 immunoglobulin heavy variable (II)-1-1 (pseudogene) -1.7345 0.1888
63171 ENSG00000149292 TTC12 tetratricopeptide repeat domain 12 -1.7341 0.5104
63170 ENSG00000241959 RN7SL76P RNA, 7SL, cytoplasmic 76, pseudogene -1.7340 0.1788
63169 ENSG00000197468 olfactory receptor, family 7 pseudogene -1.7337 1.0000
63168 ENSG00000227373 RABGAP1L-DT RABGAP1L divergent transcript -1.7334 0.8288
63167 ENSG00000100084 HIRA histone cell cycle regulator -1.7333 0.2777
63166 ENSG00000189375 TBC1D28 TBC1 domain family member 28 -1.7332 0.2294
63165 ENSG00000067177 PHKA1 phosphorylase kinase regulatory subunit alpha 1 -1.7329 0.2647
63164 ENSG00000187658 C5orf52 chromosome 5 open reading frame 52 -1.7315 0.0113

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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