Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2481579

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2481579


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5090101000001000000000-236Sequence Read ArchiveSRP074598SRP074598_M52Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeSpermHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000104237 RP1 RP1 axonemal microtubule associated 2.5850 0.0100
2 ENSG00000169241 SLC50A1 solute carrier family 50 member 1 2.5850 0.0100
3 ENSG00000179085 DPM3 dolichyl-phosphate mannosyltransferase subunit 3, regulatory 2.5850 0.0100
4 ENSG00000186073 CDIN1 CDAN1 interacting nuclease 1 2.5850 0.0001
5 ENSG00000206996 RNU6-842P RNA, U6 small nuclear 842, pseudogene 2.5850 0.0100
6 ENSG00000217195 5'-nucleotidase domain containing 1 (NT5DC1) pseudogene 2.5850 0.0001
7 ENSG00000220739 5'-nucleotidase domain containing 1 (NT5DC1) pseudogene 2.5850 0.0001
8 ENSG00000226469 ADAM1B ADAM metallopeptidase domain 1B (pseudogene) 2.5850 0.0001
9 ENSG00000227857 novel transcript 2.5850 0.0100
10 ENSG00000235812 ADAM21P1 ADAM metallopeptidase domain 21 pseudogene 1 2.5850 0.0100

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63173 ENSG00000145491 ROPN1L rhophilin associated tail protein 1 like -1.5850 0.0026
63172 ENSG00000144339 TMEFF2 transmembrane protein with EGF like and two follistatin like domains 2 -1.5850 0.0000
63171 ENSG00000143971 ETAA1 ETAA1 activator of ATR kinase -1.5850 0.0000
63170 ENSG00000143390 RFX5 regulatory factor X5 -1.5850 0.0876
63169 ENSG00000143119 CD53 CD53 molecule -1.5850 0.0000
63168 ENSG00000143032 BARHL2 BarH like homeobox 2 -1.5850 0.0876
63167 ENSG00000142856 ITGB3BP integrin subunit beta 3 binding protein -1.5850 0.0000
63166 ENSG00000141255 SPATA22 spermatogenesis associated 22 -1.5850 0.0078
63165 ENSG00000139977 NAA30 N-alpha-acetyltransferase 30, NatC catalytic subunit -1.5850 0.5207
63164 ENSG00000137571 SLCO5A1 solute carrier organic anion transporter family member 5A1 -1.5850 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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