Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2481581

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2481581


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5030203000000000000000-761Sequence Read ArchiveSRP074598SRP074598_M54Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeMetaphase II oocyteHumanGenitaliaBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000276400 VN1R9P vomeronasal 1 receptor 9 pseudogene 2.9749 0.0000
2 ENSG00000224468 LAMC1-AS1 LAMC1 antisense RNA 1 2.8074 0.0000
3 ENSG00000221023 RNU6ATAC19P RNA, U6atac small nuclear 19, pseudogene 2.6591 0.0000
4 ENSG00000255003 CYCSP28 CYCS pseudogene 28 2.6406 0.0000
5 ENSG00000120217 CD274 CD274 molecule 2.5850 0.0000
6 ENSG00000224101 ELMO1-AS1 ELMO1 antisense RNA 1 2.5850 0.0000
7 ENSG00000231345 BEND3P1 BEN domain containing 3 pseudogene 1 2.5850 0.0000
8 ENSG00000233516 novel transcript 2.5850 0.0000
9 ENSG00000137720 C11orf1 chromosome 11 open reading frame 1 2.4973 0.0000
10 ENSG00000255561 FDXACB1 ferredoxin-fold anticodon binding domain containing 1 2.4973 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63173 ENSG00000111641 NOP2 NOP2 nucleolar protein -1.7695 0.7624
63172 ENSG00000258938 novel transcript, antisense to BRMS1L -1.7692 1.0000
63171 ENSG00000248134 pseudogene similar to part of a tripartite motif-containing family protein -1.7692 1.0000
63170 ENSG00000198668 CALM1 calmodulin 1 -1.7688 0.0116
63169 ENSG00000255872 novel transcript -1.7682 0.0000
63168 ENSG00000253614 novel transcript -1.7682 0.0035
63167 ENSG00000229485 KSR1P1 kinase suppressor of ras 1 pseudogene 1 -1.7670 0.4403
63166 ENSG00000227051 C14orf132 chromosome 14 open reading frame 132 -1.7670 0.6302
63165 ENSG00000257048 LINC02417 long intergenic non-protein coding RNA 2417 -1.7667 0.6216
63164 ENSG00000201451 Y RNA -1.7661 0.0197

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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