Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2481582

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2481582


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7180101000000000000000-755Sequence Read ArchiveSRP074598SRP074598_M55Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeGV oocyteHumanGenitaliaBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000254132 MTND6P3 MT-ND6 pseudogene 3 2.5509 0.0000
2 ENSG00000206998 Y RNA 2.5236 0.0000
3 ENSG00000109670 FBXW7 F-box and WD repeat domain containing 7 2.0000 0.0000
4 ENSG00000125787 GNRH2 gonadotropin releasing hormone 2 2.0000 0.0000
5 ENSG00000232578 FAST kinase domains 1 (FASTKD1) pseudogene 2.0000 0.0000
6 ENSG00000258342 novel transcript, sense overlapping BRMS1L 2.0000 0.0006
7 ENSG00000166171 DPCD deleted in primary ciliary dyskinesia homolog (mouse) 1.7628 0.0000
8 ENSG00000141376 BCAS3 BCAS3 microtubule associated cell migration factor 1.6250 0.0000
9 ENSG00000029153 ARNTL2 aryl hydrocarbon receptor nuclear translocator like 2 1.5850 0.0068
10 ENSG00000055044 NOP58 NOP58 ribonucleoprotein 1.5850 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63173 ENSG00000270487 novel transcript, antisense to ARID1B -1.0666 0.0022
63172 ENSG00000260410 polo-like kinase 1 (PLK1) pseudogene -1.0661 0.7672
63171 ENSG00000148291 SURF2 surfeit 2 -1.0650 0.4036
63170 ENSG00000138030 KHK ketohexokinase -1.0650 0.0750
63169 ENSG00000237187 NR2F1-AS1 NR2F1 antisense RNA 1 -1.0645 0.0084
63168 ENSG00000136826 KLF4 Kruppel like factor 4 -1.0642 0.0833
63167 ENSG00000172732 MUS81 MUS81 structure-specific endonuclease subunit -1.0617 1.0000
63166 ENSG00000263613 novel transcript, antisense to PIPOX -1.0617 0.7703
63165 ENSG00000240211 PPP1R35-AS1 PPP1R35 antisense RNA 1 -1.0613 0.1250
63164 ENSG00000160813 PPP1R35 protein phosphatase 1 regulatory subunit 35 -1.0613 0.1250

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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