Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2481583

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2481583


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7180101000000000000000-755Sequence Read ArchiveSRP074598SRP074598_M56Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeGV oocyteHumanGenitaliaBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000124193 SRSF6 serine and arginine rich splicing factor 6 2.2224 0.0000
2 ENSG00000206998 Y RNA 2.2224 0.0000
3 ENSG00000100271 TTLL1 tubulin tyrosine ligase like 1 2.0000 0.0000
4 ENSG00000152620 NADK2 NAD kinase 2, mitochondrial 2.0000 0.0000
5 ENSG00000233491 novel pseudogene containing cadherin repeats 2.0000 0.0009
6 ENSG00000234735 ribosomal protein S25 (RPS25) pseudogene 2.0000 0.0000
7 ENSG00000257542 OR7E47P olfactory receptor family 7 subfamily E member 47 pseudogene 1.7925 0.0000
8 ENSG00000257663 novel transcript, antisense to C12orf44 1.7925 0.0000
10 ENSG00000068784 SRBD1 S1 RNA binding domain 1 1.5850 0.0092
63164 ENSG00000284583 MIR935 microRNA 935 -1.0000 1.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63173 ENSG00000259725 novel transcript -1.0124 0.0193
63172 ENSG00000259711 novel transcript -1.0124 0.0193
63171 ENSG00000141759 TXNL4A thioredoxin like 4A -1.0124 1.0000
63170 ENSG00000102901 CENPT centromere protein T -1.0102 0.0482
63169 ENSG00000244953 novel transcript -1.0069 0.0592
63168 ENSG00000115685 PPP1R7 protein phosphatase 1 regulatory subunit 7 -1.0040 0.8312
63167 ENSG00000226435 ANKRD18DP ankyrin repeat domain 18D, pseudogene -1.0032 0.5770
63166 ENSG00000133805 AMPD3 adenosine monophosphate deaminase 3 -1.0023 0.3251
63165 ENSG00000284586 MIR92B microRNA 92b -1.0000 0.6151
63164 ENSG00000284583 MIR935 microRNA 935 -1.0000 1.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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