Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2481584

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2481584


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7180101000000000000000-755Sequence Read ArchiveSRP074598SRP074598_M57Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeGV oocyteHumanGenitaliaBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000143520 FLG2 filaggrin family member 2 2.0000 0.0002
2 ENSG00000174021 GNG5 G protein subunit gamma 5 2.0000 0.0000
3 ENSG00000234022 novel transcript 2.0000 0.0000
4 ENSG00000236427 novel transcript 2.0000 0.0002
5 ENSG00000248468 novel transcript 2.0000 0.0000
6 ENSG00000267501 novel transcript 2.0000 0.0000
7 ENSG00000275350 tubulin, beta 3 class III (TUBB3) pseudogene 2.0000 0.0002
8 ENSG00000017260 ATP2C1 ATPase secretory pathway Ca2+ transporting 1 1.8813 0.0000
9 ENSG00000250592 novel transcript, antisense to ATP2C1 1.8813 0.0000
10 ENSG00000251579 pseudogene similar to part of makorin ring finger protein 1 1.8813 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63173 ENSG00000128604 IRF5 interferon regulatory factor 5 -1.2359 0.7297
63172 ENSG00000254647 INS insulin -1.2350 0.2602
63171 ENSG00000129965 INS-IGF2 INS-IGF2 readthrough -1.2350 0.2602
63170 ENSG00000271269 non-SMC element 4 homolog A (S. cerevisiae) (NSMCE4A) pseudogene -1.2340 1.0000
63169 ENSG00000267881 novel protein, readthrough between CEACAM5-CEACAM6 -1.2340 1.0000
63168 ENSG00000260152 stromal cell-derived factor 2 (SDF2) pseudogene -1.2340 1.0000
63167 ENSG00000258598 novel transcript -1.2340 1.0000
63166 ENSG00000254364 novel transcript -1.2340 1.0000
63165 ENSG00000253417 LINC02159 long intergenic non-protein coding RNA 2159 -1.2340 1.0000
63164 ENSG00000236611 LINC02556 long intergenic non-protein coding RNA 2556 -1.2340 1.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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