Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2481585

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2481585


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7180101000000000000000-755Sequence Read ArchiveSRP074598SRP074598_M58Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeGV oocyteHumanGenitaliaBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000211513 MIR320E microRNA 320e 2.0000 0.0000
2 ENSG00000267628 novel transcript, antisense to ATP9B 2.0000 0.0000
3 ENSG00000273893 novel transcript, sense intronic to SLC13A3 2.0000 0.0000
4 ENSG00000276791 novel transcript 1.8962 0.0000
5 ENSG00000242325 RPS12P31 ribosomal protein S12 pseudogene 31 1.8306 0.0000
6 ENSG00000254132 MTND6P3 MT-ND6 pseudogene 3 1.7431 0.0000
7 ENSG00000207415 RNU6-1151P RNA, U6 small nuclear 1151, pseudogene 1.6667 0.0000
8 ENSG00000267771 zinc finger protein (ZNF) pseudogene 1.6667 0.0000
9 ENSG00000279039 TEC 1.6667 0.0000
10 ENSG00000279294 novel transcript 1.6667 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63173 ENSG00000118855 MFSD1 major facilitator superfamily domain containing 1 -1.1127 0.3654
63172 ENSG00000254821 novel transcript, antisense to ECI2 -1.1125 0.0698
63171 ENSG00000234817 ECI2-DT ECI2 divergent transcript -1.1125 0.0698
63170 ENSG00000198721 ECI2 enoyl-CoA delta isomerase 2 -1.1125 0.0698
63169 ENSG00000146576 C7orf26 chromosome 7 open reading frame 26 -1.1122 0.8427
63168 ENSG00000271303 SRXN1 sulfiredoxin 1 -1.1117 0.2495
63167 ENSG00000253806 novel transcript -1.1114 0.0005
63166 ENSG00000130193 THEM6 thioesterase superfamily member 6 -1.1114 0.0005
63165 ENSG00000206120 EGFEM1P EGF like and EMI domain containing 1, pseudogene -1.1107 0.0126
63164 ENSG00000100505 TRIM9 tripartite motif containing 9 -1.1107 0.5743

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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