Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2481586

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2481586


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5030203000000000000000-761Sequence Read ArchiveSRP074598SRP074598_M59Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeMetaphase II oocyteHumanGenitaliaBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000201711 RNU6-1303P RNA, U6 small nuclear 1303, pseudogene 2.8074 0.0000
2 ENSG00000104047 DTWD1 DTW domain containing 1 2.5850 0.0000
3 ENSG00000252290 NA 2.5850 0.0000
4 ENSG00000253093 RNA5SP179 RNA, 5S ribosomal pseudogene 179 2.5850 0.0000
5 ENSG00000255063 RBMXP3 RBMX pseudogene 3 2.5850 0.0000
6 ENSG00000279844 TEC 2.5850 0.0000
7 ENSG00000010017 RANBP9 RAN binding protein 9 2.3219 0.0000
8 ENSG00000072201 LNX1 ligand of numb-protein X 1 2.3219 0.0000
9 ENSG00000101608 MYL12A myosin light chain 12A 2.3219 0.0000
10 ENSG00000159167 STC1 stanniocalcin 1 2.3219 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63173 ENSG00000249348 UGDH-AS1 UGDH antisense RNA 1 -1.5881 0.1763
63172 ENSG00000109814 UGDH UDP-glucose 6-dehydrogenase -1.5881 0.1763
63171 ENSG00000075388 FGF4 fibroblast growth factor 4 -1.5873 0.8548
63170 ENSG00000083520 DIS3 DIS3 homolog, exosome endoribonuclease and 3'-5' exoribonuclease -1.5866 0.1857
63169 ENSG00000197766 CFD complement factor D -1.5860 0.6160
63168 ENSG00000255057 zinc finger protein 260 (ZNF260) pseudogene -1.5855 0.0986
63167 ENSG00000284465 TAF11L7 TATA-box binding protein associated factor 11 like 7 -1.5850 1.0000
63166 ENSG00000284024 zinc finger and SCAN domain containing 29 -1.5850 1.0000
63165 ENSG00000283988 TAF11L9 TATA-box binding protein associated factor 11 like 9 -1.5850 1.0000
63164 ENSG00000283967 TAF11L8 TATA-box binding protein associated factor 11 like 8 -1.5850 1.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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