Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2481587

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2481587


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5030203000000000000000-761Sequence Read ArchiveSRP074598SRP074598_M60Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeMetaphase II oocyteHumanGenitaliaBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000270820 novel transcript, antisense to XPO1 2.8074 0.0000
2 ENSG00000232493 RPL12P11 ribosomal protein L12 pseudogene 11 2.5850 0.0000
3 ENSG00000234568 BIN2P1 bridging integrator 2 pseudogene 1 2.5850 0.0000
4 ENSG00000282327 pseudogene similar to part of glyceraldehyde-3-phosphate dehydrogenase GAPDH 2.5850 0.0000
5 ENSG00000266549 ATP6V1E1P2 ATPase H+ transporting V1 subunit E1 pseudogene 2 2.4534 0.0000
6 ENSG00000142233 NTN5 netrin 5 2.3745 0.0000
7 ENSG00000114023 FAM162A family with sequence similarity 162 member A 2.3219 0.0000
8 ENSG00000162813 BPNT1 3'(2'), 5'-bisphosphate nucleotidase 1 2.3219 0.0000
9 ENSG00000179420 OR6W1P olfactory receptor family 6 subfamily W member 1 pseudogene 2.3219 0.0000
10 ENSG00000214222 TUBBP2 tubulin beta pseudogene 2 2.3219 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63173 ENSG00000188483 IER5L immediate early response 5 like -1.5881 0.0940
63172 ENSG00000242893 RN7SL413P RNA, 7SL, cytoplasmic 413, pseudogene -1.5880 0.8238
63171 ENSG00000206920 RNY1P6 RNY1 pseudogene 6 -1.5880 0.8238
63170 ENSG00000188883 KLRG2 killer cell lectin like receptor G2 -1.5878 0.8532
63169 ENSG00000273729 novel transcript, antisense to IRF2BPL -1.5874 0.0054
63168 ENSG00000186352 ANKRD37 ankyrin repeat domain 37 -1.5872 0.0110
63167 ENSG00000236687 novel transcript -1.5854 0.7302
63166 ENSG00000265690 novel protein -1.5851 0.3989
63165 ENSG00000284261 MIR4657 microRNA 4657 -1.5850 1.0000
63164 ENSG00000283999 novel transcript -1.5850 1.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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