Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2481588

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2481588


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5030203000000000000000-761Sequence Read ArchiveSRP074598SRP074598_M61Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeMetaphase II oocyteHumanGenitaliaBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000258872 FDPSP3 farnesyl diphosphate synthase pseudogene 3 3.3494 0.0000
2 ENSG00000272507 RNU6-88P RNA, U6 small nuclear 88, pseudogene 3.0000 0.0000
3 ENSG00000099260 PALMD palmdelphin 2.8074 0.0000
4 ENSG00000121022 COPS5 COP9 signalosome subunit 5 2.8074 0.0000
5 ENSG00000260483 ribosomal protein S17 (RPS17) pseudogene 2.7974 0.0000
6 ENSG00000173966 COMM domain containing 5 (COMMD5) pseudogene 2.5850 0.0000
7 ENSG00000222370 SNORA36B small nucleolar RNA, H/ACA box 36B 2.5850 0.0000
8 ENSG00000225822 UBXN7-AS1 UBXN7 antisense RNA 1 2.5850 0.0000
9 ENSG00000227698 novel transcript 2.5850 0.0000
10 ENSG00000248684 BIN2P2 bridging integrator 2 pseudogene 2 2.5850 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63173 ENSG00000182195 LDOC1 LDOC1 regulator of NFKB signaling -1.8892 0.0817
63171 ENSG00000188693 CYP51A1-AS1 CYP51A1 antisense RNA 1 -1.8882 0.0001
63170 ENSG00000135940 COX5B cytochrome c oxidase subunit 5B -1.8880 0.1190
63169 ENSG00000026950 BTN3A1 butyrophilin subfamily 3 member A1 -1.8868 0.4111
63168 ENSG00000216819 TUBB2BP1 tubulin beta 2B class IIb pseudogene 1 -1.8867 0.0004
63167 ENSG00000261434 novel transcript, overlapping LRRC14B -1.8865 0.0012
63166 ENSG00000269486 ERVK9-11 endogenous retrovirus group K9, member 11 -1.8864 0.0007
63165 ENSG00000183722 LHFPL6 LHFPL tetraspan subfamily member 6 -1.8863 0.0279
63164 ENSG00000180113 TDRD6 tudor domain containing 6 -1.8844 0.0000
10 ENSG00000248684 BIN2P2 bridging integrator 2 pseudogene 2 2.5850 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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