Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2481589

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2481589


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5030203000000000000000-761Sequence Read ArchiveSRP074598SRP074598_M62Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeMetaphase II oocyteHumanGenitaliaBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000260257 novel transcript 2.5850 0.0000
2 ENSG00000260536 novel transcript, antisense to MAPRE1 2.5850 0.0000
3 ENSG00000275091 novel transcript, antisense to RFX1 2.5850 0.0000
4 ENSG00000213693 SEC14L1P1 SEC14 like 1 pseudogene 1 2.4387 0.0000
5 ENSG00000236295 novel transcript 2.3900 0.0000
6 ENSG00000186082 KRT18P14 keratin 18 pseudogene 14 2.3370 0.0000
7 ENSG00000144451 SPAG16 sperm associated antigen 16 2.3219 0.0000
8 ENSG00000165792 METTL17 methyltransferase like 17 2.3219 0.0000
9 ENSG00000199977 Small nucleolar RNA SNORA73 family 2.3219 0.0000
10 ENSG00000201157 Small nucleolar RNA SNORA62/SNORA6 family 2.3219 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63173 ENSG00000176903 PNMA1 PNMA family member 1 -1.7406 0.0471
63172 ENSG00000043355 ZIC2 Zic family member 2 -1.7404 0.0034
63171 ENSG00000104691 UBXN8 UBX domain protein 8 -1.7386 1.0000
63170 ENSG00000185915 KLHL34 kelch like family member 34 -1.7382 0.0287
63169 ENSG00000244740 ribosomal protein L31 (RPL31) pseudogene -1.7370 0.0001
63168 ENSG00000234224 TMEM229A transmembrane protein 229A -1.7368 0.7309
63167 ENSG00000162302 RPS6KA4 ribosomal protein S6 kinase A4 -1.7362 0.0000
63166 ENSG00000109762 SNX25 sorting nexin 25 -1.7361 0.7375
63165 ENSG00000229676 ZNF492 zinc finger protein 492 -1.7340 0.6260
63164 ENSG00000207779 MIR15B microRNA 15b -1.7333 0.4155

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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