Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2481590

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2481590


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5030203000000000000000-761Sequence Read ArchiveSRP074598SRP074598_M63Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeMetaphase II oocyteHumanGenitaliaBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000253584 novel transcript 3.0000 0.0000
2 ENSG00000198034 RPS4X ribosomal protein S4 X-linked 2.5850 0.0000
3 ENSG00000215835 Ewing sarcoma breakpoint region 1 (EWSR1) pseudogene 2.5850 0.0000
4 ENSG00000251003 ZFPM2-AS1 ZFPM2 antisense RNA 1 2.5850 0.0000
5 ENSG00000251609 SETP12 SET pseudogene 12 2.5850 0.0000
6 ENSG00000248483 POU5F2 POU domain class 5, transcription factor 2 2.3585 0.0000
7 ENSG00000272406 novel transcript 2.3585 0.0000
8 ENSG00000201157 Small nucleolar RNA SNORA62/SNORA6 family 2.3219 0.0000
9 ENSG00000206587 RNU6-46P RNA, U6 small nuclear 46, pseudogene 2.3219 0.0000
10 ENSG00000212428 Small nucleolar RNA SNORD115 2.3219 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63173 ENSG00000163251 FZD5 frizzled class receptor 5 -1.6720 0.0469
63172 ENSG00000229068 TMPOP1 thymopoietin pseudogene 1 -1.6712 0.8202
63171 ENSG00000224936 SUCLA2P1 SUCLA2 pseudogene 1 -1.6712 0.8202
63170 ENSG00000221949 LINC01465 long intergenic non-protein coding RNA 1465 -1.6706 0.0379
63169 ENSG00000199179 MIRLET7I microRNA let-7i -1.6706 0.0379
63168 ENSG00000165156 ZHX1 zinc fingers and homeoboxes 1 -1.6682 0.7244
63167 ENSG00000137962 ARHGAP29 Rho GTPase activating protein 29 -1.6680 0.3627
63166 ENSG00000256045 MTRNR2L10 MT-RNR2 like 10 -1.6673 0.4007
63165 ENSG00000222874 RN7SKP33 RN7SK pseudogene 33 -1.6673 0.4007
63164 ENSG00000276639 MIR7154 microRNA 7154 -1.6667 1.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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