Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2481591

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2481591


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5030203000000000000000-761Sequence Read ArchiveSRP074598SRP074598_M64Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeMetaphase II oocyteHumanGenitaliaBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000204149 AGAP6 ArfGAP with GTPase domain, ankyrin repeat and PH domain 6 2.8074 0.0000
2 ENSG00000213250 RBMS2P1 RNA binding motif single stranded interacting protein 2 pseudogene 1 2.8074 0.0000
3 ENSG00000255541 CKS1BP4 CDC28 protein kinase regulatory subunit 1B pseudogene 4 2.8074 0.0000
4 ENSG00000222831 MIR1537 microRNA 1537 2.7267 0.0000
5 ENSG00000202023 Small nucleolar RNA SNORD81 2.5850 0.0000
6 ENSG00000208839 SNORA35 small nucleolar RNA, H/ACA box 35 2.5850 0.0000
7 ENSG00000271227 SREK1IP1P2 SREK1IP1 pseudogene 2 2.5850 0.0000
8 ENSG00000232846 SLC25A6P3 solute carrier family 25 member 6 pseudogene 3 2.4037 0.0000
9 ENSG00000171819 ANGPTL7 angiopoietin like 7 2.3219 0.0000
10 ENSG00000178913 TAF7 TATA-box binding protein associated factor 7 2.3219 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63173 ENSG00000275880 novel transcript, antisense to CARKD -1.6875 0.0074
63172 ENSG00000088812 ATRN attractin -1.6872 0.0009
63171 ENSG00000154727 GABPA GA binding protein transcription factor subunit alpha -1.6870 0.0113
63170 ENSG00000154723 ATP5PF ATP synthase peripheral stalk subunit F6 -1.6870 0.0113
63169 ENSG00000207405 SNORA64 small nucleolar RNA, H/ACA box 64 -1.6869 0.0000
63168 ENSG00000206811 SNORA10 small nucleolar RNA, H/ACA box 10 -1.6869 0.0000
63167 ENSG00000189233 NUGGC nuclear GTPase, germinal center associated -1.6855 0.1031
63166 ENSG00000145198 VWA5B2 von Willebrand factor A domain containing 5B2 -1.6854 0.0000
63165 ENSG00000116761 CTH cystathionine gamma-lyase -1.6848 0.0036
63164 ENSG00000012983 MAP4K5 mitogen-activated protein kinase kinase kinase kinase 5 -1.6833 0.0002

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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