Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2481592

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2481592


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7.02E+21Sequence Read ArchiveSRP074598SRP074598_M65Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeBlastocystHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000234144 COX6CP13 cytochrome c oxidase subunit 6C pseudogene 13 1.7925 0.0001
2 ENSG00000154719 MRPL39 mitochondrial ribosomal protein L39 1.5850 0.0227
4 ENSG00000183246 RIMBP3C RIMS binding protein 3C 1.5850 0.0227
5 ENSG00000196096 SPAG16-DT SPAG16 divergent transcript 1.5850 0.0000
6 ENSG00000206869 SNORA70F small nucleolar RNA, H/ACA box 70F 1.5850 0.0000
7 ENSG00000212214 SNORA48B small nucleolar RNA, H/ACA box 48B 1.5850 0.0227
8 ENSG00000217929 CICP18 capicua transcriptional repressor pseudogene 18 1.5850 0.0000
9 ENSG00000222352 RN7SKP221 RN7SK pseudogene 221 1.5850 0.0227
10 ENSG00000224134 pseudogene similar to part of mediator complex subunit 12 MED12 1.5850 0.0227
63164 ENSG00000161682 FAM171A2 family with sequence similarity 171 member A2 -1.3883 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63173 ENSG00000205810 KLRC3 killer cell lectin like receptor C3 -1.3900 1.0000
63172 ENSG00000183981 MAGEA13P MAGE family member A13, pseudogene -1.3900 0.3769
63171 ENSG00000168930 TRIM49 tripartite motif containing 49 -1.3900 0.0174
63170 ENSG00000167359 OR51I1 olfactory receptor family 51 subfamily I member 1 -1.3900 1.0000
63169 ENSG00000125864 BFSP1 beaded filament structural protein 1 -1.3898 0.0000
63168 ENSG00000231445 TIMM8AP1 translocase of inner mitochondrial membrane 8A pseudogene 1 -1.3893 0.0010
63167 ENSG00000129988 LBP lipopolysaccharide binding protein -1.3892 0.0108
63166 ENSG00000273172 LINC02091 long intergenic non-protein coding RNA 2091 -1.3889 0.0000
63165 ENSG00000224992 novel transcript -1.3885 0.2460
63164 ENSG00000161682 FAM171A2 family with sequence similarity 171 member A2 -1.3883 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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