Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2481593

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2481593


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7.02E+21Sequence Read ArchiveSRP074598SRP074598_M66Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeBlastocystHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000135220 UGT2A3 UDP glucuronosyltransferase family 2 member A3 2.0000 0.0024
2 ENSG00000243095 RPL3P10 ribosomal protein L3 pseudogene 10 2.0000 0.0024
3 ENSG00000248442 OR10J7P olfactory receptor family 10 subfamily J member 7 pseudogene 2.0000 0.0024
4 ENSG00000172154 OR8I2 olfactory receptor family 8 subfamily I member 2 1.5850 0.0181
5 ENSG00000230772 VN1R108P vomeronasal 1 receptor 108 pseudogene 1.5850 0.0181
6 ENSG00000231058 MSANTD2P1 Myb/SANT DNA binding domain containing 2 pseudogene 1 1.5850 0.0000
7 ENSG00000231762 novel pseudogene 1.5850 0.0000
8 ENSG00000233300 EIF4A1P1 eukaryotic translation initiation factor 4A1 pseudogene 1 1.5850 0.0181
9 ENSG00000239808 RN7SL255P RNA, 7SL, cytoplasmic 255, pseudogene 1.5850 0.0003
10 ENSG00000241566 IGKV2D-24 immunoglobulin kappa variable 2D-24 (non-functional) 1.5850 0.0181

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63173 ENSG00000006695 COX10 cytochrome c oxidase assembly factor heme A:farnesyltransferase COX10 -1.3871 0.2305
63172 ENSG00000158473 CD1D CD1d molecule -1.3870 0.0001
63171 ENSG00000274532 family with sequence similarity 208, member A (FAM208A) -1.3858 0.0013
63170 ENSG00000196653 ZNF502 zinc finger protein 502 -1.3856 0.3071
63169 ENSG00000275553 ELOA3C elongin A3 family member C -1.3855 0.0000
63168 ENSG00000169594 BNC1 basonuclin 1 -1.3850 0.0000
63167 ENSG00000226491 FTOP1 FTO pseudogene 1 -1.3849 0.0000
63166 ENSG00000279873 LINC01126 long intergenic non-protein coding RNA 1126 -1.3846 0.0000
63165 ENSG00000269885 VN1R79P vomeronasal 1 receptor 79 pseudogene -1.3846 0.0634
63164 ENSG00000267695 novel transcript -1.3846 0.0634

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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