Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2481594

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2481594


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7.02E+21Sequence Read ArchiveSRP074598SRP074598_M67Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeBlastocystHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000199260 RNU6-874P RNA, U6 small nuclear 874, pseudogene 1.5850 0.0170
2 ENSG00000201015 RNU6-280P RNA, U6 small nuclear 280, pseudogene 1.5850 0.0170
3 ENSG00000222030 LINC01793 long intergenic non-protein coding RNA 1793 1.5850 0.0170
4 ENSG00000223117 RN7SKP296 RN7SK pseudogene 296 1.5850 0.0170
5 ENSG00000232235 CDY3P chromodomain Y-linked 3 pseudogene 1.5850 0.0170
6 ENSG00000235523 novel transcript 1.5850 0.0170
7 ENSG00000236378 novel transcript 1.5850 0.0000
8 ENSG00000244196 PPIAP15 peptidylprolyl isomerase A pseudogene 15 1.5850 0.0170
9 ENSG00000255745 novel transcript 1.5850 0.0170
10 ENSG00000256037 MRPL40P1 mitochondrial ribosomal protein L40 pseudogene 1 1.5850 0.0170

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63173 ENSG00000122691 TWIST1 twist family bHLH transcription factor 1 -1.3613 0.0000
63172 ENSG00000253471 novel transcript -1.3608 0.0000
63170 ENSG00000273983 H3C8 H3 clustered histone 8 -1.3603 0.0049
63169 ENSG00000283569 MIR4773-2 microRNA 4773-2 -1.3600 0.0048
63168 ENSG00000280250 TEC -1.3600 0.1000
63167 ENSG00000264684 MIR4773-1 microRNA 4773-1 -1.3600 0.0048
63166 ENSG00000137960 GIPC2 GIPC PDZ domain containing family member 2 -1.3599 0.0001
63165 ENSG00000251445 novel transcript -1.3598 0.0000
63164 ENSG00000167842 MIS12 MIS12 kinetochore complex component -1.3597 0.0000
10 ENSG00000256037 MRPL40P1 mitochondrial ribosomal protein L40 pseudogene 1 1.5850 0.0170

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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