Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2481595

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2481595


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7.02E+21Sequence Read ArchiveSRP074598SRP074598_M68Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeBlastocystHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000186925 KRTAP19-6 keratin associated protein 19-6 2.0000 0.0041
2 ENSG00000236612 KRTAP19-11P keratin associated protein 19-11, pseudogene 2.0000 0.0041
3 ENSG00000264657 MIR3171 microRNA 3171 2.0000 0.0000
4 ENSG00000270055 novel transcript 2.0000 0.0000
5 ENSG00000258548 LINC00645 long intergenic non-protein coding RNA 645 1.6667 0.0000
6 ENSG00000164841 TMEM74 transmembrane protein 74 1.5850 0.0256
7 ENSG00000181958 OR4A15 olfactory receptor family 4 subfamily A member 15 1.5850 0.0256
8 ENSG00000187900 OR5H7P olfactory receptor family 5 subfamily H member 7 pseudogene 1.5850 0.0256
9 ENSG00000199784 RNU6-1287P RNA, U6 small nuclear 1287, pseudogene 1.5850 0.0000
10 ENSG00000202281 RNA5SP235 RNA, 5S ribosomal pseudogene 235 1.5850 0.0256

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63173 ENSG00000267173 novel protein -1.3750 0.0140
63172 ENSG00000252103 RNU6-917P RNA, U6 small nuclear 917, pseudogene -1.3750 0.1465
63171 ENSG00000222800 RNU2-62P RNA, U2 small nuclear 62, pseudogene -1.3750 0.1465
63170 ENSG00000254158 F-box and WD repeat domain containing 2 (FBXW2) pseudogene -1.3741 0.0000
63169 ENSG00000253614 novel transcript -1.3732 0.0000
63168 ENSG00000284029 MIR6805 microRNA 6805 -1.3729 0.0000
63167 ENSG00000283958 MIR1248 microRNA 1248 -1.3729 0.0000
63166 ENSG00000221420 SNORA81 small nucleolar RNA, H/ACA box 81 -1.3729 0.0000
63165 ENSG00000200418 SNORA63B small nucleolar RNA, H/ACA box 63B -1.3729 0.0000
63164 ENSG00000200320 SNORA63 small nucleolar RNA, H/ACA box 63 -1.3729 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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