Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2481596

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2481596


Profile download
7020001000000000000000-715Sequence Read ArchiveSRP074598SRP074598_M69Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeICMHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000225655 novel transcript 2.0000 0.0051
2 ENSG00000175749 EIF3KP1 eukaryotic translation initiation factor 3 subunit K pseudogene 1 1.9914 0.0000
3 ENSG00000264566 MIR23C microRNA 23c 1.6667 0.0000
4 ENSG00000240579 pseudogene similar to part of CD2 (cytoplasmic tail) binding protein 2 (CD2BP2) 1.6458 0.0000
5 ENSG00000183909 OR4G2P olfactory receptor family 4 subfamily G member 2 pseudogene 1.5850 0.0294
6 ENSG00000184022 OR2T10 olfactory receptor family 2 subfamily T member 10 1.5850 0.0294
7 ENSG00000198974 MIR30E microRNA 30e 1.5850 0.0294
8 ENSG00000201602 Y RNA 1.5850 0.0294
9 ENSG00000216813 40S ribosomal protein S12 (RPS12) pseudogene 1.5850 0.0000
10 ENSG00000219253 RPS6P7 ribosomal protein S6 pseudogene 7 1.5850 0.0294

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63173 ENSG00000212468 RNU6-754P RNA, U6 small nuclear 754, pseudogene -1.3739 0.0000
63172 ENSG00000252228 NA -1.3736 0.0100
63171 ENSG00000137142 IGFBPL1 insulin like growth factor binding protein like 1 -1.3735 0.0000
63170 ENSG00000249960 embryonic ectoderm development (EED) pseudogene -1.3732 0.0000
63169 ENSG00000255378 PRR23D2 proline rich 23 domain containing 2 -1.3732 0.0006
63168 ENSG00000111845 PAK1IP1 PAK1 interacting protein 1 -1.3729 0.0000
63167 ENSG00000244968 LIFR-AS1 LIFR antisense RNA 1 -1.3728 0.0000
63166 ENSG00000091664 SLC17A6 solute carrier family 17 member 6 -1.3726 0.0000
63165 ENSG00000072832 CRMP1 collapsin response mediator protein 1 -1.3725 0.0000
63164 ENSG00000169435 RASSF6 Ras association domain family member 6 -1.3722 0.0016

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

full download

Now loading...