Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2481597

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2481597


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7020001000000000000000-715Sequence Read ArchiveSRP074598SRP074598_M70Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeICMHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000199319 RN7SKP25 RN7SK pseudogene 25 2.5850 0.0000
2 ENSG00000212410 RNU6-932P RNA, U6 small nuclear 932, pseudogene 2.5850 0.0001
3 ENSG00000231633 LINC00283 long intergenic non-protein coding RNA 283 2.3219 0.0005
4 ENSG00000241963 RN7SL655P RNA, 7SL, cytoplasmic 655, pseudogene 2.0763 0.0000
5 ENSG00000172139 SLC9C1 solute carrier family 9 member C1 2.0000 0.0000
6 ENSG00000207589 MIR508 microRNA 508 2.0000 0.0035
7 ENSG00000224396 METTL15P3 methyltransferase like 15 pseudogene 3 2.0000 0.0035
8 ENSG00000227217 novel transcript 2.0000 0.0035
9 ENSG00000229487 ALG13-AS1 ALG13 antisense RNA 1 2.0000 0.0035
10 ENSG00000234385 RCC2P1 regulator of chromosome condensation 2 pseudogene 1 2.0000 0.0035

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63173 ENSG00000254832 OR4A40P olfactory receptor family 4 subfamily A member 40 pseudogene -1.5850 1.0000
63172 ENSG00000254457 OR5D2P olfactory receptor family 5 subfamily D member 2 pseudogene -1.5850 1.0000
63170 ENSG00000254051 NADH dehydrogenase -1.5850 1.0000
63169 ENSG00000254049 NRG1-IT3 NRG1 intronic transcript 3 -1.5850 1.0000
63168 ENSG00000253983 novel transcript -1.5850 0.6002
63167 ENSG00000253893 FAM85B family with sequence similarity 85 member B -1.5850 0.1541
63166 ENSG00000253879 novel transcript -1.5850 0.6002
63165 ENSG00000253860 IGKV3-34 immunoglobulin kappa variable 3-34 (pseudogene) -1.5850 1.0000
63164 ENSG00000253762 novel transcript -1.5850 1.0000
10 ENSG00000234385 RCC2P1 regulator of chromosome condensation 2 pseudogene 1 2.0000 0.0035

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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