Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2481598

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2481598


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7020001000000000000000-715Sequence Read ArchiveSRP074598SRP074598_M71Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeICMHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000224315 RPL7P7 ribosomal protein L7 pseudogene 7 2.4534 0.0000
2 ENSG00000228599 RPL7P52 ribosomal protein L7 pseudogene 52 2.3219 0.0000
3 ENSG00000229816 DDX50P1 DEAD-box helicase 50 pseudogene 1 2.3219 0.0008
4 ENSG00000244363 RPL7P23 ribosomal protein L7 pseudogene 23 2.3219 0.0000
5 ENSG00000249312 ARL2BPP4 ADP ribosylation factor like GTPase 2 binding protein pseudogene 4 2.3219 0.0000
6 ENSG00000269096 CT45A3 cancer/testis antigen family 45 member A3 2.3219 0.0008
7 ENSG00000231544 RSL24D1P11 ribosomal L24 domain containing 1 pseudogene 11 2.2146 0.0000
8 ENSG00000280561 novel transcript, antisense to C10orf137 2.0763 0.0000
9 ENSG00000111537 IFNG interferon gamma 2.0000 0.0048
10 ENSG00000183206 POTEC POTE ankyrin domain family member C 2.0000 0.0048

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63173 ENSG00000253118 NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 4, 9kDa (NDUFA4) pseudogene -1.5850 1.0000
63172 ENSG00000253010 RN7SKP256 RN7SK pseudogene 256 -1.5850 1.0000
63171 ENSG00000252604 RNU2-44P RNA, U2 small nuclear 44, pseudogene -1.5850 0.0002
63170 ENSG00000252479 RNA5SP309 RNA, 5S ribosomal pseudogene 309 -1.5850 1.0000
63169 ENSG00000252449 RNU6-139P RNA, U6 small nuclear 139, pseudogene -1.5850 1.0000
63168 ENSG00000252425 NA -1.5850 0.5982
63167 ENSG00000252395 RNU6-1007P RNA, U6 small nuclear 1007, pseudogene -1.5850 0.5982
63166 ENSG00000252323 RNU6-184P RNA, U6 small nuclear 184, pseudogene -1.5850 1.0000
63165 ENSG00000252198 Y RNA -1.5850 1.0000
63164 ENSG00000251810 RN7SKP132 RN7SK pseudogene 132 -1.5850 1.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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