Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2481599

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2481599


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7020001000000000000000-715Sequence Read ArchiveSRP074598SRP074598_M72Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeICMHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000257748 LINC02281 long intergenic non-protein coding RNA 2281 2.8074 0.0000
2 ENSG00000258038 LINC02327 long intergenic non-protein coding RNA 2327 2.8074 0.0000
3 ENSG00000184675 AMER1 APC membrane recruitment protein 1 2.5850 0.0000
4 ENSG00000181518 OR8D4 olfactory receptor family 8 subfamily D member 4 2.3219 0.0000
5 ENSG00000199487 Y RNA 2.3219 0.0005
6 ENSG00000227905 MED6P1 mediator complex subunit 6 pseudogene 1 2.3219 0.0005
7 ENSG00000249266 MTHFD2P6 methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase pseudogene 6 2.3219 0.0005
8 ENSG00000270976 ubiquitin C (UBC) pseudogene 2.3219 0.0005
9 ENSG00000261436 novel transcript 2.0913 0.0000
10 ENSG00000259950 protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 1 (PPFIA1) pseudogene 2.0763 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63173 ENSG00000266698 MIR3945 microRNA 3945 -1.7341 0.0616
63172 ENSG00000204963 PCDHA7 protocadherin alpha 7 -1.7331 0.0000
63171 ENSG00000277209 RPPH1 ribonuclease P RNA component H1 -1.7331 0.0172
63170 ENSG00000229327 novel transcript -1.7316 0.0000
63169 ENSG00000186326 RGS9BP regulator of G protein signaling 9 binding protein -1.7312 0.0000
63168 ENSG00000103769 RAB11A RAB11A, member RAS oncogene family -1.7310 0.0000
63167 ENSG00000154639 CXADR CXADR Ig-like cell adhesion molecule -1.7310 0.0000
63166 ENSG00000246089 novel transcript -1.7299 0.0000
63165 ENSG00000155897 ADCY8 adenylate cyclase 8 -1.7295 0.0000
63164 ENSG00000198889 DCAF12L1 DDB1 and CUL4 associated factor 12 like 1 -1.7290 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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