Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2481600

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2481600


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7020001000000000000000-715Sequence Read ArchiveSRP074598SRP074598_M73Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeICMHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000233716 MTFR2P1 MTFR2 pseudogene 1 2.4534 0.0000
2 ENSG00000228898 MTCO1P43 MT-CO1 pseudogene 43 2.3219 0.0003
3 ENSG00000230950 MTND2P21 MT-ND2 pseudogene 21 2.3219 0.0003
4 ENSG00000250503 novel transcript 2.3219 0.0003
5 ENSG00000145908 ZNF300 zinc finger protein 300 2.0000 0.0022
6 ENSG00000200162 Y RNA 2.0000 0.0022
7 ENSG00000227514 ribosomal protein L18 (RPL18) pseudogene 2.0000 0.0022
8 ENSG00000228041 EIF3JP1 EIF3J pseudogene 1 2.0000 0.0022
9 ENSG00000231633 LINC00283 long intergenic non-protein coding RNA 283 2.0000 0.0000
10 ENSG00000236285 NPM1P8 nucleophosmin 1 pseudogene 8 2.0000 0.0022

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63173 ENSG00000196670 ZFP62 ZFP62 zinc finger protein -1.7050 0.0074
63172 ENSG00000279278 novel transcript -1.7046 0.0000
63171 ENSG00000132952 USPL1 ubiquitin specific peptidase like 1 -1.7046 0.0000
63170 ENSG00000203668 CHML CHM like Rab escort protein -1.7046 0.0031
63169 ENSG00000280273 novel transcript, antisense to MTMR9 -1.7044 0.0000
63168 ENSG00000253127 IGKV2D-36 immunoglobulin kappa variable 2D-36 (pseudogene) -1.7044 0.0664
63167 ENSG00000232747 IGKV1D-35 immunoglobulin kappa variable 1D-35 (pseudogene) -1.7044 0.0664
63166 ENSG00000273209 novel transcript -1.7040 0.0000
63165 ENSG00000167476 JSRP1 junctional sarcoplasmic reticulum protein 1 -1.7040 0.0000
63164 ENSG00000241082 RN7SL259P RNA, 7SL, cytoplasmic 259, pseudogene -1.7037 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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