Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2481601

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2481601


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7020001000000000000000-715Sequence Read ArchiveSRP074598SRP074598_M74Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeICMHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000201708 RNA5SP359 RNA, 5S ribosomal pseudogene 359 3.3219 0.0129
2 ENSG00000249751 ECSCR endothelial cell surface expressed chemotaxis and apoptosis regulator 3.2131 0.0000
3 ENSG00000279686 novel transcript 3.2131 0.0000
4 ENSG00000235128 novel pseudogene 3.1699 0.0245
5 ENSG00000108433 GOSR2 golgi SNAP receptor complex member 2 3.0850 0.0000
6 ENSG00000195024 RNU1-15P RNA, U1 small nuclear 15, pseudogene 3.0000 0.0239
7 ENSG00000201044 RNU6-268P RNA, U6 small nuclear 268, pseudogene 3.0000 0.0239
8 ENSG00000188011 RTP5 receptor transporter protein 5 (putative) 2.9662 0.0000
9 ENSG00000237341 SYP-AS1 SYP antisense RNA 1 2.9486 0.0000
10 ENSG00000141505 ASGR1 asialoglycoprotein receptor 1 2.8573 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63173 ENSG00000183798 EMILIN3 elastin microfibril interfacer 3 -1.3036 0.0000
63172 ENSG00000008283 CYB561 cytochrome b561 -1.3033 0.0000
63171 ENSG00000185024 BRF1 BRF1 RNA polymerase III transcription initiation factor subunit -1.3012 0.0000
63170 ENSG00000282221 novel transcript, antisense to LAD1 -1.2995 0.0000
63169 ENSG00000242017 ALG1L15P ALG1 like 15, pseudogene -1.2982 0.0000
63168 ENSG00000279875 TEC -1.2977 0.0000
63167 ENSG00000171793 CTPS1 CTP synthase 1 -1.2973 0.0000
63166 ENSG00000228400 novel transcript -1.2961 0.0000
63165 ENSG00000224076 novel transcript -1.2957 0.0000
63164 ENSG00000136535 TBR1 T-box brain transcription factor 1 -1.2957 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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