Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2481602

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2481602


Profile download
7.02E+21Sequence Read ArchiveSRP074598SRP074598_M75Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeBlastocystHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000255886 novel transcript 2.0000 0.0041
2 ENSG00000223945 ribosomal protein L6 (RPL6) pseudogene 1.7925 0.0001
3 ENSG00000231383 FGF12-AS1 FGF12 antisense RNA 1 1.6887 0.0000
4 ENSG00000112115 IL17A interleukin 17A 1.5850 0.0006
5 ENSG00000200475 RN7SKP162 RN7SK pseudogene 162 1.5850 0.0255
6 ENSG00000204704 OR2W1 olfactory receptor family 2 subfamily W member 1 1.5850 0.0255
7 ENSG00000205609 EIF3CL eukaryotic translation initiation factor 3 subunit C like 1.5850 0.0006
8 ENSG00000206711 Y RNA 1.5850 0.0255
9 ENSG00000226530 novel transcript 1.5850 0.0000
10 ENSG00000228041 EIF3JP1 EIF3J pseudogene 1 1.5850 0.0006

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63173 ENSG00000259172 novel transcript, antisense to SNRPA1 and PCSK6 -1.3538 0.0000
63172 ENSG00000180581 SRP9P1 signal recognition particle 9 pseudogene 1 -1.3537 0.0000
63171 ENSG00000199940 RN7SKP75 RN7SK pseudogene 75 -1.3534 0.0000
63170 ENSG00000138669 PRKG2 protein kinase cGMP-dependent 2 -1.3528 0.0000
63169 ENSG00000240356 RPL23AP7 ribosomal protein L23a pseudogene 7 -1.3524 0.0000
63168 ENSG00000188566 NDOR1 NADPH dependent diflavin oxidoreductase 1 -1.3522 0.0000
63167 ENSG00000270808 ataxin 1-like (ATXN1L) pseudogene -1.3514 0.0000
63166 ENSG00000170915 PAQR8 progestin and adipoQ receptor family member 8 -1.3512 0.0000
63165 ENSG00000280406 TEC -1.3510 0.3707
63164 ENSG00000279845 TEC -1.3510 0.3707

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

full download

Now loading...