Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2481605

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2481605


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7020001000000000000000-715Sequence Read ArchiveSRP074598SRP074598_M78Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeICMHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000214759 ribosomal protein L36a (RPL36A) pseudogene 3.3219 0.0000
2 ENSG00000202268 Small nucleolar RNA U3 3.1699 0.0000
3 ENSG00000144488 ESPNL espin like 3.0384 0.0000
4 ENSG00000115827 DCAF17 DDB1 and CUL4 associated factor 17 3.0000 0.0000
5 ENSG00000242673 RN7SL167P RNA, 7SL, cytoplasmic 167, pseudogene 3.0000 0.0000
6 ENSG00000101003 GINS1 GINS complex subunit 1 2.8074 0.0000
7 ENSG00000105339 DENND3 DENN domain containing 3 2.8074 0.0000
8 ENSG00000264089 MIR3681 microRNA 3681 2.8074 0.0000
9 ENSG00000070367 EXOC5 exocyst complex component 5 2.5850 0.0000
10 ENSG00000072849 DERL2 derlin 2 2.5850 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63173 ENSG00000235582 ribosomal protein L24 (RPL24) pseudogene -2.0000 1.0000
63172 ENSG00000235444 PSMB3P2 proteasome subunit beta 3 pseudogene 2 -2.0000 1.0000
63171 ENSG00000234675 novel transcript -2.0000 0.5990
63170 ENSG00000234466 HDGFL3P1 HDGFL3 pseudogene 1 -2.0000 0.3711
63169 ENSG00000234457 ribosomal protein L39 (RPL39) pseudogene -2.0000 0.5990
63168 ENSG00000234296 novel transcript -2.0000 0.5990
63167 ENSG00000233837 EIF3LP2 eukaryotic translation initiation factor 3 subunit L pseudogene 2 -2.0000 1.0000
63166 ENSG00000233593 LINC02609 long intergenic non-protein coding RNA 2609 -2.0000 1.0000
63165 ENSG00000233575 transcription factor IIA small 12 kDa subunit (GTF2A2) pseudogene -2.0000 1.0000
63164 ENSG00000233574 novel transcript -2.0000 1.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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