Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2481606

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2481606


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7020001000000000000000-715Sequence Read ArchiveSRP074598SRP074598_M79Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeICMHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000221603 MIR1184-3 microRNA 1184-3 2.5850 0.0001
2 ENSG00000252982 RN7SKP234 RN7SK pseudogene 234 2.5850 0.0000
3 ENSG00000277150 F8A3 coagulation factor VIII associated 3 2.5850 0.0001
4 ENSG00000277745 H2AB3 H2A.B variant histone 3 2.5850 0.0001
5 ENSG00000243593 LINC02049 long intergenic non-protein coding RNA 2049 2.5000 0.0000
6 ENSG00000111716 LDHB lactate dehydrogenase B 2.3219 0.0005
7 ENSG00000223078 RNU2-55P RNA, U2 small nuclear 55, pseudogene 2.3219 0.0005
8 ENSG00000224935 novel transcript 2.3219 0.0005
9 ENSG00000271368 immunoglobulin (CD79A) binding protein 1, pseudogene 2.3219 0.0005
10 ENSG00000254132 MTND6P3 MT-ND6 pseudogene 3 2.0226 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63173 ENSG00000272354 novel transcript -1.5850 1.0000
63172 ENSG00000272262 RNU6-89P RNA, U6 small nuclear 89, pseudogene -1.5850 1.0000
63171 ENSG00000272139 novel transcript, antisense to SNCAIP -1.5850 1.0000
63170 ENSG00000272049 novel transcript -1.5850 1.0000
63169 ENSG00000271952 LINC01954 long intergenic non-protein coding RNA 1954 -1.5850 0.6004
63168 ENSG00000271856 LINC01215 long intergenic non-protein coding RNA 1215 -1.5850 1.0000
63167 ENSG00000271691 novel IGHV pseudogene -1.5850 0.3770
63166 ENSG00000271385 transmembrane protein 230 (TMEM230) pseudogene -1.5850 0.6159
63165 ENSG00000271242 PRELID3BP2 PRELI domain containing 3B pseudogene 2 -1.5850 1.0000
63164 ENSG00000271194 RNF138P2 ring finger protein 138 pseudogene 2 -1.5850 1.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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