Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2481607

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2481607


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7020001000000000000000-715Sequence Read ArchiveSRP074598SRP074598_M80Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeICMHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000065923 SLC9A7 solute carrier family 9 member A7 2.3219 0.0000
2 ENSG00000186803 IFNA10 interferon alpha 10 2.3219 0.0000
3 ENSG00000224065 SRIP2 sorcin pseudogene 2 2.3219 0.0000
4 ENSG00000234105 novel transcript 2.3219 0.0004
5 ENSG00000257070 cytochrome c oxidase subunit VIIa polypeptide 2 like (COX7A2L) pseudogene 2.1610 0.0000
6 ENSG00000197309 OR10D3 olfactory receptor family 10 subfamily D member 3 (putative) 2.0000 0.0000
7 ENSG00000218643 RPL5P20 ribosomal protein L5 pseudogene 20 2.0000 0.0029
8 ENSG00000222924 RNU6-1148P RNA, U6 small nuclear 1148, pseudogene 2.0000 0.0000
9 ENSG00000229565 LINC02264 long intergenic non-protein coding RNA 2264 2.0000 0.0029
10 ENSG00000230169 RPL30P16 ribosomal protein L30 pseudogene 16 2.0000 0.0029

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63173 ENSG00000278463 H2AC4 H2A clustered histone 4 -1.6012 0.0000
63172 ENSG00000201925 RNA5S15 RNA, 5S ribosomal 15 -1.6007 0.0000
63171 ENSG00000201355 RNA5S14 RNA, 5S ribosomal 14 -1.6007 0.0000
63170 ENSG00000119986 AVPI1 arginine vasopressin induced 1 -1.6004 0.0000
63169 ENSG00000271133 novel transcript, antisense to ITGB8 -1.6000 0.0000
63168 ENSG00000283342 NBPF13P NBPF member 13, pseudogene -1.6000 0.3834
63167 ENSG00000278813 Charcot-Leyden crystal galectin (CLC) pseudogene -1.6000 0.3834
63166 ENSG00000275557 novel transcript -1.6000 0.3834
63165 ENSG00000263573 MIR4270 microRNA 4270 -1.6000 0.3834
63164 ENSG00000258636 novel transcript -1.6000 0.7927

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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