Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2481609

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2481609


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7020007000000000000000-780Sequence Read ArchiveSRP074598SRP074598_M82Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeTEHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000243051 RN7SL269P RNA, 7SL, cytoplasmic 269, pseudogene 2.3219 0.0005
2 ENSG00000256512 novel transcript 2.3219 0.0000
3 ENSG00000242256 RN7SL57P RNA, 7SL, cytoplasmic 57, pseudogene 2.1699 0.0000
4 ENSG00000201826 RNU6-867P RNA, U6 small nuclear 867, pseudogene 2.0000 0.0033
5 ENSG00000202471 RNU4-20P RNA, U4 small nuclear 20, pseudogene 2.0000 0.0000
6 ENSG00000207963 MIR569 microRNA 569 2.0000 0.0033
7 ENSG00000214124 SNRPEP9 SNRPE pseudogene 9 2.0000 0.0033
8 ENSG00000244329 UBA52P9 ubiquitin A-52 residue ribosomal protein fusion product 1 pseudogene 9 2.0000 0.0033
9 ENSG00000244357 RN7SL145P RNA, 7SL, cytoplasmic 145, pseudogene 2.0000 0.0000
10 ENSG00000248824 UDP glucuronosyltransferase 2 family pseudogene 2.0000 0.0033

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63173 ENSG00000222240 RN7SKP156 RN7SK pseudogene 156 -1.5850 1.0000
63172 ENSG00000222018 FAM243A family with sequence similarity 243 member A -1.5850 1.0000
63171 ENSG00000221938 OR2A14 olfactory receptor family 2 subfamily A member 14 -1.5850 0.6011
63170 ENSG00000221813 OR6B1 olfactory receptor family 6 subfamily B member 1 -1.5850 1.0000
63169 ENSG00000221398 NA -1.5850 0.6011
63168 ENSG00000221093 NA -1.5850 1.0000
63167 ENSG00000219500 novel pseudogene -1.5850 1.0000
63166 ENSG00000218806 adaptor-related protein complex 3, sigma 1 subunit (AP3S1) pseudogene -1.5850 0.1527
63165 ENSG00000218536 laminin receptor 1 (67kD, ribosomal protein SA) (LAMR1) pseudogene -1.5850 1.0000
63164 ENSG00000216859 DHFRP5 dihydrofolate reductase pseudogene 5 -1.5850 1.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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