Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2481611

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2481611


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7020007000000000000000-780Sequence Read ArchiveSRP074598SRP074598_M84Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeTEHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000273894 SLC20A1P2 solute carrier family 20 member 1 pseudogene 2 2.4973 0.0000
2 ENSG00000165076 PRSS37 serine protease 37 2.3219 0.0005
3 ENSG00000236818 ARL5AP2 ARL5A pseudogene 2 2.3219 0.0005
4 ENSG00000254939 zinc finger protein 614 (ZNF614) pseudogene 2.3219 0.0005
5 ENSG00000274149 protein kinase, X-linked (PRKX) pseudogene 2.3219 0.0000
6 ENSG00000196143 OR11H13P olfactory receptor family 11 subfamily H member 13 pseudogene 2.0000 0.0034
7 ENSG00000200818 RNU6-1204P RNA, U6 small nuclear 1204, pseudogene 2.0000 0.0000
8 ENSG00000206999 RNU6-622P RNA, U6 small nuclear 622, pseudogene 2.0000 0.0034
9 ENSG00000223543 TCEAL4P1 transcription elongation factor A like 4 pseudogene 1 2.0000 0.0034
10 ENSG00000224488 SAMM50P1 SAMM50 sorting and assembly machinery component pseudogene 1 2.0000 0.0034

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63173 ENSG00000265614 progesterone receptor membrane component 2 (PGRMC2) pseudogene -1.5850 1.0000
63172 ENSG00000265352 LINC01899 long intergenic non-protein coding RNA 1899 -1.5850 1.0000
63171 ENSG00000265257 novel transcript -1.5850 1.0000
63170 ENSG00000265098 MIR4510 microRNA 4510 -1.5850 1.0000
63169 ENSG00000265093 RN7SL246P RNA, 7SL, cytoplasmic 246, pseudogene -1.5850 1.0000
63168 ENSG00000264990 novel transcript -1.5850 1.0000
63167 ENSG00000264330 MIR5186 microRNA 5186 -1.5850 1.0000
63166 ENSG00000264061 FGF7P1 fibroblast growth factor 7 pseudogene 1 -1.5850 1.0000
63165 ENSG00000263967 MIR4290 microRNA 4290 -1.5850 0.6006
63164 ENSG00000263781 NADH dehydrogenase (ubiquinone) Fe-S protein 5, 15kDa (NADH-coenzyme Q reductase) (NDUFS5) pseudogene -1.5850 0.1534

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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