Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2481612

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2481612


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7020007000000000000000-780Sequence Read ArchiveSRP074598SRP074598_M85Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeTEHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000223698 GOLGA6L11P golgin A6 family like 11, pseudogene 2.3219 0.0008
2 ENSG00000226726 TMEM256P2 transmembrane protein 256 pseudogene 2 2.3219 0.0008
3 ENSG00000270207 novel transcript, antisense to GRM7 2.1073 0.0000
4 ENSG00000144063 MALL mal, T cell differentiation protein like 2.0000 0.0049
5 ENSG00000186038 HTR3E 5-hydroxytryptamine receptor 3E 2.0000 0.0049
6 ENSG00000187999 HNRNPA1P61 heterogeneous nuclear ribonucleoprotein A1 pseudogene 61 2.0000 0.0049
7 ENSG00000198283 OR5B21 olfactory receptor family 5 subfamily B member 21 2.0000 0.0000
8 ENSG00000199285 Y RNA 2.0000 0.0049
9 ENSG00000203758 OR10T1P olfactory receptor family 10 subfamily T member 1 pseudogene 2.0000 0.0049
10 ENSG00000210678 RNU6ATAC2P RNA, U6atac small nuclear 2, pseudogene 2.0000 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63173 ENSG00000246790 novel transcript, antisense to SORL1 -1.5850 1.0000
63172 ENSG00000246774 COL25A1-DT COL25A1 divergent transcript -1.5850 1.0000
63171 ENSG00000246115 SUPT4H1P2 SPT4 homolog, DSIF elongation factor subunit pseudogene 2 -1.5850 1.0000
63170 ENSG00000245384 CXXC4-AS1 CXXC4 antisense RNA 1 -1.5850 1.0000
63169 ENSG00000244952 novel transcript -1.5850 0.2294
63168 ENSG00000244575 IGKV1-27 immunoglobulin kappa variable 1-27 -1.5850 1.0000
63167 ENSG00000244231 CSPG4P2Y CSPG4 pseudogene 2 Y-linked -1.5850 0.5982
63166 ENSG00000244048 RPS18P6 ribosomal protein S18 pseudogene 6 -1.5850 1.0000
63165 ENSG00000243758 RPL35AP15 ribosomal protein L35a pseudogene 15 -1.5850 1.0000
63164 ENSG00000243547 HNRNPKP4 heterogeneous nuclear ribonucleoprotein K pseudogene 4 -1.5850 1.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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