Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2481613

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2481613


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7020007000000000000000-780Sequence Read ArchiveSRP074598SRP074598_M86Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeTEHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000277701 novel transcript 2.8074 0.0000
2 ENSG00000251464 RPL7L1P13 ribosomal protein L7 like 1 pseudogene 13 2.5850 0.0001
3 ENSG00000243023 UBA52P3 ubiquitin A-52 residue ribosomal protein fusion product 1 pseudogene 3 2.3219 0.0006
4 ENSG00000249917 LINC00536 long intergenic non-protein coding RNA 536 2.3219 0.0000
5 ENSG00000265617 MIR548AG2 microRNA 548ag-2 2.3219 0.0006
6 ENSG00000277837 novel transcript 2.3219 0.0006
7 ENSG00000231802 DNAJB6P3 DNAJB6 pseudogene 3 2.2516 0.0000
8 ENSG00000005893 LAMP2 lysosomal associated membrane protein 2 2.0000 0.0038
9 ENSG00000062096 ARSF arylsulfatase F 2.0000 0.0038
10 ENSG00000087299 L2HGDH L-2-hydroxyglutarate dehydrogenase 2.0000 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63173 ENSG00000152402 GUCY1A2 guanylate cyclase 1 soluble subunit alpha 2 -1.7162 0.0000
63172 ENSG00000264617 family with sequence similarity 182 (FAM182A) pseudogene -1.7156 0.0000
63171 ENSG00000231655 EMP2P1 EMP2 pseudogene 1 -1.7145 0.0014
63170 ENSG00000233492 novel transcript -1.7143 0.0000
63169 ENSG00000241526 pseudogene similar to part of glyceraldehyde-3-phosphate dehydrogenase GAPDH -1.7143 0.0938
63168 ENSG00000201407 NA -1.7143 0.0938
63167 ENSG00000271559 synovial sarcoma translocation gene on chromosome 18-like 1 (SS18L1) pseudogene -1.7140 0.0001
63166 ENSG00000034533 ASTE1 asteroid homolog 1 -1.7131 0.0000
63165 ENSG00000253261 cytochrome c oxidase subunit VIIa polypeptide 2 like (COX7A2L) pseudogene -1.7130 0.0633
63164 ENSG00000177776 RPS2P2 ribosomal protein S2 pseudogene 2 -1.7124 0.0752

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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