Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2481614

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2481614


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5030203000000000000000-761Sequence Read ArchiveSRP074598SRP074598_M87Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeMetaphase II oocyteHumanGenitaliaBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000243593 LINC02049 long intergenic non-protein coding RNA 2049 3.1699 0.0000
2 ENSG00000208023 MIR185 microRNA 185 2.8281 0.0000
3 ENSG00000182853 VMO1 vitelline membrane outer layer 1 homolog 2.5850 0.0000
4 ENSG00000224001 ADP-ribosylation factor-like 8B (ARL8B) pseudogene 2.5850 0.0000
5 ENSG00000227489 novel transcript 2.5850 0.0000
6 ENSG00000229855 novel transcript 2.5850 0.0000
7 ENSG00000252994 RNU6-1231P RNA, U6 small nuclear 1231, pseudogene 2.5850 0.0000
8 ENSG00000253687 novel transcript 2.5850 0.0000
9 ENSG00000279674 TEC 2.5850 0.0000
10 ENSG00000280254 TEC 2.5850 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63173 ENSG00000240671 IGKV1-8 immunoglobulin kappa variable 1-8 -1.8229 0.7200
63172 ENSG00000184347 SLIT3 slit guidance ligand 3 -1.8222 0.0012
63171 ENSG00000238007 novel transcript -1.8221 0.6363
63170 ENSG00000225510 PCDH8P1 protocadherin 8 pseudogene 1 -1.8215 0.4372
63169 ENSG00000181915 ADO 2-aminoethanethiol dioxygenase -1.8210 0.0223
63168 ENSG00000128714 HOXD13 homeobox D13 -1.8197 0.0483
63167 ENSG00000198646 NCOA6 nuclear receptor coactivator 6 -1.8177 0.1341
63166 ENSG00000204625 HCG9 HLA complex group 9 -1.8174 0.0929
63165 ENSG00000198948 MFAP3L microfibril associated protein 3 like -1.8171 0.0000
63164 ENSG00000145685 LHFPL2 LHFPL tetraspan subfamily member 2 -1.8169 0.0287

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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