Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2481615

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2481615


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5030203000000000000000-761Sequence Read ArchiveSRP074598SRP074598_M88Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeMetaphase II oocyteHumanGenitaliaBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000242163 ribosomal protein S24 (RPS24) pseudogene 2.8074 0.0000
2 ENSG00000251456 novel transcript 2.8074 0.0000
3 ENSG00000034239 EFCAB1 EF-hand calcium binding domain 1 2.5850 0.0000
4 ENSG00000227233 CICP17 capicua transcriptional repressor pseudogene 17 2.5850 0.0000
5 ENSG00000243593 LINC02049 long intergenic non-protein coding RNA 2049 2.5850 0.0000
6 ENSG00000254021 novel transcript 2.5850 0.0000
7 ENSG00000254615 novel transcript 2.5850 0.0000
8 ENSG00000258344 novel transcript, sense overlapping to COPZ1 & HNRNPA1 2.5850 0.0000
9 ENSG00000179219 LINC00311 long intergenic non-protein coding RNA 311 2.3219 0.0000
10 ENSG00000198862 LTN1 listerin E3 ubiquitin protein ligase 1 2.3219 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63173 ENSG00000234406 ubiquitin specific peptidase 22 (USP22) pseudogene -1.5850 0.2530
63172 ENSG00000234176 HSPA8P1 heat shock protein family A (Hsp70) member 8 pseudogene 1 -1.5850 1.0000
63171 ENSG00000234168 LINC01039 long intergenic non-protein coding RNA 1039 -1.5850 0.3942
63170 ENSG00000234069 GAPDHP53 glyceraldehyde 3 phosphate dehydrogenase pseudogene 53 -1.5850 1.0000
63169 ENSG00000233765 CDRT15P12 CDRT15 pseudogene 12 -1.5850 1.0000
63168 ENSG00000233251 novel transcript, antisense to CCDC85A -1.5850 0.0470
63167 ENSG00000233087 RAB6D RAB6D, member RAS oncogene family -1.5850 1.0000
63166 ENSG00000232889 tandem C2 domains, nuclear (TC2N) pseudogene -1.5850 0.4053
63165 ENSG00000232718 GAPDHP48 glyceraldehyde 3 phosphate dehydrogenase pseudogene 48 -1.5850 0.6384
63164 ENSG00000232678 SPTLC1P4 serine palmitoyltransferase long chain base subunit 1 pseudogene 4 -1.5850 1.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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