Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2481617

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2481617


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5090101000001000000000-236Sequence Read ArchiveSRP074598SRP074598_M90Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeSpermHumanGenitaliaBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000188051 TMEM221 transmembrane protein 221 3.1699 0.0297
2 ENSG00000102003 SYP synaptophysin 3.0609 0.0000
3 ENSG00000237341 SYP-AS1 SYP antisense RNA 1 3.0609 0.0000
4 ENSG00000126231 PROZ protein Z, vitamin K dependent plasma glycoprotein 3.0000 0.0000
5 ENSG00000283828 WAS/WASL-interacting protein family member 2-like 3.0000 0.0000
6 ENSG00000212609 RNU1-139P RNA, U1 small nuclear 139, pseudogene 2.8074 0.0910
7 ENSG00000269887 novel transcript, sense intronic to PBX1 2.8074 0.0003
8 ENSG00000274263 MIR7702 microRNA 7702 2.8074 0.0910
9 ENSG00000137628 DDX60 DExD/H-box helicase 60 2.7925 0.0053
10 ENSG00000196344 ADH7 alcohol dehydrogenase 7 (class IV), mu or sigma polypeptide 2.7740 0.0003

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63173 ENSG00000256980 KHDC1L KH domain containing 1 like -1.0000 0.3712
63172 ENSG00000256340 ABCC6P1 ATP binding cassette subfamily C member 6 pseudogene 1 -1.0000 0.0511
63171 ENSG00000256325 novel transcript -1.0000 0.3712
63170 ENSG00000256283 METTL8P1 methyltransferase like 8 pseudogene 1 -1.0000 0.3712
63169 ENSG00000255947 novel transcript -1.0000 0.3712
63168 ENSG00000255916 novel transcript -1.0000 0.0511
63167 ENSG00000255837 TAS2R20 taste 2 receptor member 20 -1.0000 0.3712
63166 ENSG00000255568 BRWD1-AS2 BRWD1 antisense RNA 2 -1.0000 0.0001
63165 ENSG00000255515 N-6 adenine-specific DNA methyltransferase 1 (putative) (N6AMT1) pseudogene -1.0000 0.3712
63164 ENSG00000255357 novel transcript -1.0000 0.3712

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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