Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2481618

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2481618


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7010000000000000000000-772Sequence Read ArchiveSRP074598SRP074598_M91Single-cell DNA methylome sequencing of human preimplantation embryosMethylome8-cell embryoHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000172489 OR5T3 olfactory receptor family 5 subfamily T member 3 2.3219 0.0044
2 ENSG00000188517 COL25A1 collagen type XXV alpha 1 chain 2.3219 0.0000
3 ENSG00000196937 FAM3C FAM3 metabolism regulating signaling molecule C 2.3219 0.0044
4 ENSG00000237076 novel transcript 2.3219 0.0044
5 ENSG00000260631 RBM22P12 RNA binding motif protein 22 pseudogene 12 2.3219 0.0044
6 ENSG00000277425 novel transcript 2.3219 0.0000
7 ENSG00000278816 novel transcript 2.3219 0.0000
8 ENSG00000279581 novel transcript 2.3219 0.0000
9 ENSG00000171603 CLSTN1 calsyntenin 1 2.2414 0.0000
10 ENSG00000225187 novel transcript 2.1331 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63173 ENSG00000122484 RPAP2 RNA polymerase II associated protein 2 -1.5850 0.0178
63172 ENSG00000120555 SEPTIN7P9 septin 7 pseudogene 9 -1.5850 0.0015
63171 ENSG00000119673 ACOT2 acyl-CoA thioesterase 2 -1.5850 0.0001
63170 ENSG00000119523 ALG2 ALG2 alpha-1,3/1,6-mannosyltransferase -1.5850 0.3492
63169 ENSG00000116690 PRG4 proteoglycan 4 -1.5850 1.0000
63168 ENSG00000115556 PLCD4 phospholipase C delta 4 -1.5850 0.5784
63167 ENSG00000113389 NPR3 natriuretic peptide receptor 3 -1.5850 1.0000
63166 ENSG00000109861 CTSC cathepsin C -1.5850 0.3492
63165 ENSG00000109107 ALDOC aldolase, fructose-bisphosphate C -1.5850 1.0000
63164 ENSG00000107372 ZFAND5 zinc finger AN1-type containing 5 -1.5850 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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