Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2481619

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2481619


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7010000000000000000000-772Sequence Read ArchiveSRP074598SRP074598_M92Single-cell DNA methylome sequencing of human preimplantation embryosMethylome8-cell embryoHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000228135 LINC01494 long intergenic non-protein coding RNA 1494 2.3219 0.0000
2 ENSG00000242673 RN7SL167P RNA, 7SL, cytoplasmic 167, pseudogene 2.3219 0.0063
3 ENSG00000264322 RN7SL448P RNA, 7SL, cytoplasmic 448, pseudogene 2.2146 0.0000
4 ENSG00000114113 RBP2 retinol binding protein 2 2.1073 0.0000
5 ENSG00000052802 MSMO1 methylsterol monooxygenase 1 2.0000 0.0000
6 ENSG00000153989 NUS1 NUS1 dehydrodolichyl diphosphate synthase subunit 2.0000 0.0222
7 ENSG00000196472 UDP glucuronosyltransferase 2 family, polypeptide A3 (UGT2A3) pseudogene 2.0000 0.0222
8 ENSG00000200331 RNU6-183P RNA, U6 small nuclear 183, pseudogene 2.0000 0.0222
9 ENSG00000200360 RNU6-792P RNA, U6 small nuclear 792, pseudogene 2.0000 0.0005
10 ENSG00000200408 RNA5SP74 RNA, 5S ribosomal pseudogene 74 2.0000 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63173 ENSG00000230408 BZW1-AS1 BZW1 antisense RNA 1 -1.4875 0.0414
63172 ENSG00000206615 RNU6-338P RNA, U6 small nuclear 338, pseudogene -1.4875 0.0414
63171 ENSG00000169271 HSPB3 heat shock protein family B (small) member 3 -1.4875 0.0414
63170 ENSG00000101842 VSIG1 V-set and immunoglobulin domain containing 1 -1.4875 0.0414
63169 ENSG00000263813 MIR3679 microRNA 3679 -1.4874 0.0000
63168 ENSG00000075407 ZNF37A zinc finger protein 37A -1.4834 0.0000
63167 ENSG00000249163 novel transcript, antisense to PRPF39 -1.4823 0.0000
63166 ENSG00000185246 PRPF39 pre-mRNA processing factor 39 -1.4823 0.0000
63165 ENSG00000277830 NA -1.4812 0.0000
63164 ENSG00000274760 NA -1.4812 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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