Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2481620

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2481620


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7010000000000000000000-772Sequence Read ArchiveSRP074598SRP074598_M93Single-cell DNA methylome sequencing of human preimplantation embryosMethylome8-cell embryoHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000251340 MTCYBP35 MT-CYB pseudogene 35 2.9269 0.0000
2 ENSG00000254132 MTND6P3 MT-ND6 pseudogene 3 2.5933 0.0000
3 ENSG00000001629 ANKIB1 ankyrin repeat and IBR domain containing 1 2.3219 0.0000
4 ENSG00000001631 KRIT1 KRIT1 ankyrin repeat containing 2.3219 0.0000
5 ENSG00000222520 RNA5SP451 RNA, 5S ribosomal pseudogene 451 2.3219 0.0069
6 ENSG00000254088 SLC2A3P4 solute carrier family 2 member 3 pseudogene 4 2.3219 0.0000
7 ENSG00000254381 TUBB8P5 tubulin beta 8 class VIII pseudogene 5 2.3219 0.0069
8 ENSG00000274507 novel transcript, antisense to PYGB 2.3023 0.0000
9 ENSG00000207012 RNU6-72P RNA, U6 small nuclear 72, pseudogene 2.1582 0.0000
10 ENSG00000226652 PSMD10P2 proteasome 26S subunit, non-ATPase, 10 pseudogene 2 2.0480 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63173 ENSG00000084628 NKAIN1 sodium/potassium transporting ATPase interacting 1 -1.4875 0.0000
63172 ENSG00000146054 TRIM7 tripartite motif containing 7 -1.4857 0.0000
63171 ENSG00000101977 MCF2 MCF.2 cell line derived transforming sequence -1.4825 0.0000
63170 ENSG00000188803 SHISA6 shisa family member 6 -1.4805 0.0000
63169 ENSG00000172543 CTSW cathepsin W -1.4799 0.0000
63166 ENSG00000148600 CDHR1 cadherin related family member 1 -1.4791 0.0000
63165 ENSG00000258399 novel transcript -1.4777 0.0000
63164 ENSG00000252677 NA -1.4747 0.0000
10 ENSG00000226652 PSMD10P2 proteasome 26S subunit, non-ATPase, 10 pseudogene 2 2.0480 0.0000
9 ENSG00000207012 RNU6-72P RNA, U6 small nuclear 72, pseudogene 2.1582 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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