Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2481621

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2481621


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7010000000000000000000-772Sequence Read ArchiveSRP074598SRP074598_M94Single-cell DNA methylome sequencing of human preimplantation embryosMethylome8-cell embryoHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000132874 SLC14A2 solute carrier family 14 member 2 2.5850 0.0010
2 ENSG00000218337 pseudogene similar to part of myotubularin related protein 9 MTMR9 2.3219 0.0039
3 ENSG00000255239 TREHP1 trehalase pseudogene 1 2.3219 0.0039
4 ENSG00000265939 UBE2CP2 ubiquitin conjugating enzyme E2 C pseudogene 2 2.3219 0.0000
5 ENSG00000188056 TREML4 triggering receptor expressed on myeloid cells like 4 2.1610 0.0000
6 ENSG00000254132 MTND6P3 MT-ND6 pseudogene 3 2.0058 0.0000
7 ENSG00000091039 OSBPL8 oxysterol binding protein like 8 2.0000 0.0155
8 ENSG00000099139 PCSK5 proprotein convertase subtilisin/kexin type 5 2.0000 0.0155
9 ENSG00000142856 ITGB3BP integrin subunit beta 3 binding protein 2.0000 0.0002
10 ENSG00000175820 CCDC168 coiled-coil domain containing 168 2.0000 0.0002

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63173 ENSG00000220517 ASS1P1 argininosuccinate synthetase 1 pseudogene 1 -1.4819 0.0015
63172 ENSG00000173083 HPSE heparanase -1.4817 0.0002
63171 ENSG00000169594 BNC1 basonuclin 1 -1.4812 0.0000
63170 ENSG00000258973 novel transcript -1.4811 0.0000
63169 ENSG00000169826 CSGALNACT2 chondroitin sulfate N-acetylgalactosaminyltransferase 2 -1.4805 0.0000
63168 ENSG00000229292 RFPL4AL1 ret finger protein like 4A like 1 -1.4786 0.0071
63167 ENSG00000184178 SCFD2 sec1 family domain containing 2 -1.4786 0.0071
63166 ENSG00000175868 CALCB calcitonin related polypeptide beta -1.4786 0.0071
63165 ENSG00000126545 CSN1S1 casein alpha s1 -1.4786 0.0071
63164 ENSG00000270828 novel transcript -1.4779 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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