Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2481622

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2481622


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7010000000000000000000-772Sequence Read ArchiveSRP074598SRP074598_M95Single-cell DNA methylome sequencing of human preimplantation embryosMethylome8-cell embryoHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000244921 MTCYBP18 MT-CYB pseudogene 18 2.5518 0.0000
2 ENSG00000249119 MTND6P4 MT-ND6 pseudogene 4 2.3836 0.0000
3 ENSG00000254132 MTND6P3 MT-ND6 pseudogene 3 2.3433 0.0000
4 ENSG00000099977 DDT D-dopachrome tautomerase 2.3219 0.0126
5 ENSG00000099984 GSTT2 glutathione S-transferase theta 2 (gene/pseudogene) 2.3219 0.0126
6 ENSG00000119013 NDUFB3 NADH:ubiquinone oxidoreductase subunit B3 2.3219 0.0002
7 ENSG00000127515 OR7A10 olfactory receptor family 7 subfamily A member 10 2.3219 0.0000
8 ENSG00000131982 UBE2L2 ubiquitin conjugating enzyme E2 L2 (pseudogene) 2.3219 0.0002
9 ENSG00000162757 C1orf74 chromosome 1 open reading frame 74 2.3219 0.0126
10 ENSG00000200326 RNA5SP391 RNA, 5S ribosomal pseudogene 391 2.3219 0.0126

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63173 ENSG00000170549 IRX1 iroquois homeobox 1 -1.5850 0.0023
63172 ENSG00000170396 ZNF804A zinc finger protein 804A -1.5850 0.5543
63171 ENSG00000170166 HOXD4 homeobox D4 -1.5850 0.0008
63170 ENSG00000169551 CT55 cancer/testis antigen 55 -1.5850 0.0040
63169 ENSG00000169488 OR4K15 olfactory receptor family 4 subfamily K member 15 -1.5850 0.0115
63168 ENSG00000169302 STK32A serine/threonine kinase 32A -1.5850 0.3081
63167 ENSG00000169139 UBE2V2 ubiquitin conjugating enzyme E2 V2 -1.5850 0.3081
63166 ENSG00000168769 TET2 tet methylcytosine dioxygenase 2 -1.5850 0.0000
63165 ENSG00000168333 PPDPFL pancreatic progenitor cell differentiation and proliferation factor like -1.5850 0.0372
63164 ENSG00000167390 POM121L3P POM121 transmembrane nucleoporin like 3, pseudogene -1.5850 0.0372

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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