Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2481623

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2481623


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7010000000000000000000-772Sequence Read ArchiveSRP074598SRP074598_M96Single-cell DNA methylome sequencing of human preimplantation embryosMethylome8-cell embryoHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000251340 MTCYBP35 MT-CYB pseudogene 35 3.2124 0.0000
2 ENSG00000254132 MTND6P3 MT-ND6 pseudogene 3 2.6535 0.0000
3 ENSG00000167165 UGT1A6 UDP glucuronosyltransferase family 1 member A6 2.5850 0.0000
4 ENSG00000199024 MIR103A2 microRNA 103a-2 2.3219 0.0094
5 ENSG00000249262 mitochondrial ribosomal protein L19 (MRPL19) pseudogene 2.3219 0.0094
6 ENSG00000249901 novel transcript 2.3219 0.0094
7 ENSG00000275582 novel transcript, antisense to PANK2 2.3219 0.0000
8 ENSG00000283320 MIR103B2 microRNA 103b-2 2.3219 0.0094
9 ENSG00000264940 SNORD3C small nucleolar RNA, C/D box 3C 2.2951 0.0000
10 ENSG00000271128 chromosome 7 open reading frame 73 (C7orf73) pseudogene 2.2146 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63173 ENSG00000171747 LGALS4 galectin 4 -1.5850 0.0642
63172 ENSG00000170925 TEX13B testis expressed 13B -1.5850 0.0048
63170 ENSG00000170498 KISS1 KiSS-1 metastasis suppressor -1.5850 0.3172
63169 ENSG00000170290 SLN sarcolipin -1.5850 0.3172
63168 ENSG00000164164 OTUD4 OTU deubiquitinase 4 -1.5850 0.0000
63167 ENSG00000164151 ICE1 interactor of little elongation complex ELL subunit 1 -1.5850 0.0642
63166 ENSG00000163736 PPBP pro-platelet basic protein -1.5850 1.0000
63165 ENSG00000163564 PYHIN1 pyrin and HIN domain family member 1 -1.5850 1.0000
63164 ENSG00000163131 CTSS cathepsin S -1.5850 1.0000
10 ENSG00000271128 chromosome 7 open reading frame 73 (C7orf73) pseudogene 2.2146 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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