Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2481624

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2481624


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7010000000000000000000-772Sequence Read ArchiveSRP074598SRP074598_M97Single-cell DNA methylome sequencing of human preimplantation embryosMethylome8-cell embryoHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000264940 SNORD3C small nucleolar RNA, C/D box 3C 2.9749 0.0000
2 ENSG00000257279 novel transcript 2.3324 0.0000
3 ENSG00000205609 EIF3CL eukaryotic translation initiation factor 3 subunit C like 2.3219 0.0000
4 ENSG00000250250 uncharacterized LOC101929472 2.3219 0.0000
5 ENSG00000070269 TMEM260 transmembrane protein 260 2.0000 0.0241
6 ENSG00000113845 TIMMDC1 translocase of inner mitochondrial membrane domain containing 1 2.0000 0.0006
7 ENSG00000132109 TRIM21 tripartite motif containing 21 2.0000 0.0000
8 ENSG00000198826 ARHGAP11A Rho GTPase activating protein 11A 2.0000 0.0000
9 ENSG00000199420 RN7SKP170 RN7SK pseudogene 170 2.0000 0.0241
10 ENSG00000199535 RNA5SP305 RNA, 5S ribosomal pseudogene 305 2.0000 0.0241

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63173 ENSG00000171431 KRT20 keratin 20 -1.5850 0.5845
63172 ENSG00000170367 CST5 cystatin D -1.5850 0.1151
63171 ENSG00000170262 MRAP melanocortin 2 receptor accessory protein -1.5850 0.0148
63170 ENSG00000169903 TM4SF4 transmembrane 4 L six family member 4 -1.5850 0.1913
63169 ENSG00000168779 SHOX2 short stature homeobox 2 -1.5850 0.0000
63168 ENSG00000168772 CXXC4 CXXC finger protein 4 -1.5850 0.0032
63167 ENSG00000166855 CLPX caseinolytic mitochondrial matrix peptidase chaperone subunit X -1.5850 0.0003
63166 ENSG00000166261 ZNF202 zinc finger protein 202 -1.5850 0.0241
63165 ENSG00000166148 AVPR1A arginine vasopressin receptor 1A -1.5850 0.0000
63164 ENSG00000164411 GJB7 gap junction protein beta 7 -1.5850 0.1913

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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