Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2481625

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2481625


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7010000000000000000000-772Sequence Read ArchiveSRP074598SRP074598_M98Single-cell DNA methylome sequencing of human preimplantation embryosMethylome8-cell embryoHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000203875 SNHG5 small nucleolar RNA host gene 5 3.7875 0.0000
2 ENSG00000275072 SNORD50B small nucleolar RNA, C/D box 50B 3.7875 0.0000
3 ENSG00000264940 SNORD3C small nucleolar RNA, C/D box 3C 2.6870 0.0000
4 ENSG00000105339 DENND3 DENN domain containing 3 2.3219 0.0000
5 ENSG00000100346 CACNA1I calcium voltage-gated channel subunit alpha1 I 2.0000 0.0003
6 ENSG00000111726 CMAS cytidine monophosphate N-acetylneuraminic acid synthetase 2.0000 0.0000
7 ENSG00000136732 GYPC glycophorin C (Gerbich blood group) 2.0000 0.0000
8 ENSG00000231898 MYO3B-AS1 MYO3B antisense RNA 1 2.0000 0.0003
9 ENSG00000240143 novel transcript 2.0000 0.0003
10 ENSG00000260480 C2orf69P4 chromosome 2 open reading frame 69 pseudogene 4 2.0000 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63173 ENSG00000147533 GOLGA7 golgin A7 -1.0000 1.0000
63172 ENSG00000146904 EPHA1 EPH receptor A1 -1.0000 1.0000
63171 ENSG00000146834 MEPCE methylphosphate capping enzyme -1.0000 1.0000
63170 ENSG00000146592 CREB5 cAMP responsive element binding protein 5 -1.0000 0.4088
63169 ENSG00000146215 CRIP3 cysteine rich protein 3 -1.0000 1.0000
63168 ENSG00000145936 KCNMB1 potassium calcium-activated channel subfamily M regulatory beta subunit 1 -1.0000 1.0000
63167 ENSG00000145794 MEGF10 multiple EGF like domains 10 -1.0000 0.6194
63166 ENSG00000145703 IQGAP2 IQ motif containing GTPase activating protein 2 -1.0000 1.0000
63165 ENSG00000145592 RPL37 ribosomal protein L37 -1.0000 1.0000
63164 ENSG00000145041 DCAF1 DDB1 and CUL4 associated factor 1 -1.0000 1.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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