Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2481626

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2481626


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7010000000000000000000-772Sequence Read ArchiveSRP074598SRP074598_M99Single-cell DNA methylome sequencing of human preimplantation embryosMethylome8-cell embryoHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000203875 SNHG5 small nucleolar RNA host gene 5 3.8307 0.0000
2 ENSG00000275072 SNORD50B small nucleolar RNA, C/D box 50B 3.8307 0.0000
3 ENSG00000254132 MTND6P3 MT-ND6 pseudogene 3 3.6296 0.0000
4 ENSG00000264940 SNORD3C small nucleolar RNA, C/D box 3C 3.6092 0.0000
5 ENSG00000251340 MTCYBP35 MT-CYB pseudogene 35 3.3524 0.0000
6 ENSG00000232184 novel transcript 2.5850 0.0008
7 ENSG00000220937 HNRNPA1P41 heterogeneous nuclear ribonucleoprotein A1 pseudogene 41 2.3219 0.0032
8 ENSG00000226059 HMGB3P20 high mobility group box 3 pseudogene 20 2.3219 0.0000
9 ENSG00000274116 zinc finger protein 511 (ZNF511) pseudogene 2.3219 0.0000
10 ENSG00000094631 HDAC6 histone deacetylase 6 2.0000 0.0134

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63173 ENSG00000236493 EIF2S2P3 eukaryotic translation initiation factor 2 subunit 2 beta pseudogene 3 -1.5850 0.2115
63172 ENSG00000236483 MTND2P40 MT-ND2 pseudogene 40 -1.5850 1.0000
63171 ENSG00000236456 density-regulated protein (DENR) pseudogene -1.5850 1.0000
63170 ENSG00000236234 novel transcript, antisense to PLEKHM1 -1.5850 0.2115
63169 ENSG00000236199 novel transcript -1.5850 1.0000
63168 ENSG00000235988 novel pseudogene -1.5850 0.0183
63167 ENSG00000235828 RPL36AP26 ribosomal protein L36a pseudogene 26 -1.5850 0.1308
63166 ENSG00000235761 MTCO3P46 MT-CO3 pseudogene 46 -1.5850 0.1308
63165 ENSG00000235731 LINC02250 long intergenic non-protein coding RNA 2250 -1.5850 0.5789
63164 ENSG00000235686 PPIAP20 peptidylprolyl isomerase A pseudogene 20 -1.5850 0.2115

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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