Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2481627

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2481627


Profile download
7010000000000000000000-772Sequence Read ArchiveSRP074598SRP074598_M100Single-cell DNA methylome sequencing of human preimplantation embryosMethylome8-cell embryoHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000251340 MTCYBP35 MT-CYB pseudogene 35 3.8135 0.0000
2 ENSG00000254132 MTND6P3 MT-ND6 pseudogene 3 3.2788 0.0000
3 ENSG00000203875 SNHG5 small nucleolar RNA host gene 5 3.0539 0.0000
4 ENSG00000275072 SNORD50B small nucleolar RNA, C/D box 50B 3.0539 0.0000
5 ENSG00000280288 TEC 2.5850 0.0000
6 ENSG00000117507 FMO6P flavin containing dimethylaniline monoxygenase 6, pseudogene 2.3219 0.0001
7 ENSG00000152642 GPD1L glycerol-3-phosphate dehydrogenase 1 like 2.3219 0.0000
8 ENSG00000179002 TAS1R2 taste 1 receptor member 2 2.3219 0.0000
9 ENSG00000197124 ZNF682 zinc finger protein 682 2.3219 0.0090
10 ENSG00000199319 RN7SKP25 RN7SK pseudogene 25 2.3219 0.0090

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63173 ENSG00000230310 novel transcript -1.5850 1.0000
63172 ENSG00000230224 PHBP9 prohibitin pseudogene 9 -1.5850 1.0000
63171 ENSG00000230215 LINC01840 long intergenic non-protein coding RNA 1840 -1.5850 1.0000
63170 ENSG00000230099 TRBV5-4 T cell receptor beta variable 5-4 -1.5850 1.0000
63169 ENSG00000229940 TSPY22P testis specific protein Y-linked 22, pseudogene -1.5850 0.1868
63168 ENSG00000229869 novel transcript -1.5850 0.0000
63167 ENSG00000229673 novel transcript -1.5850 1.0000
63166 ENSG00000229630 LINC01264 long intergenic non-protein coding RNA 1264 -1.5850 1.0000
63165 ENSG00000229525 novel transcript, antisense to DNPEP -1.5850 0.1171
63164 ENSG00000229433 LINC02069 long intergenic non-protein coding RNA 2069 -1.5850 0.0017

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

full download

Now loading...