Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2481628

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2481628


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7010000000000000000000-772Sequence Read ArchiveSRP074598SRP074598_M101Single-cell DNA methylome sequencing of human preimplantation embryosMethylome8-cell embryoHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000276094 Small nucleolar RNA SNORA70 3.0000 0.0000
2 ENSG00000276562 RN7SL565P RNA, 7SL, cytoplasmic 565, pseudogene 3.0000 0.0000
3 ENSG00000277340 ribosomal protein L10 (RPL10) pseudogene 3.0000 0.0000
4 ENSG00000226042 CDY10P chromodomain Y-linked 10 pseudogene 2.9122 0.0000
5 ENSG00000197416 FABP12 fatty acid binding protein 12 2.8074 0.0005
6 ENSG00000236032 OR5H14 olfactory receptor family 5 subfamily H member 14 2.8074 0.0000
7 ENSG00000249225 novel transcript, antisense to OR5H1, OR5H14, OR5H15 2.8074 0.0000
8 ENSG00000255323 LINC01495 long intergenic non-protein coding RNA 1495 2.8074 0.0005
9 ENSG00000201640 RN7SKP28 RN7SK pseudogene 28 2.5850 0.0019
10 ENSG00000217878 pseudogene similar to zinc finger proteins 2.5850 0.0019

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63173 ENSG00000164087 POC1A POC1 centriolar protein A -1.8938 0.0000
63172 ENSG00000082175 PGR progesterone receptor -1.8937 0.0000
63171 ENSG00000226824 novel transcript -1.8935 0.0000
63170 ENSG00000201968 RNA5SP138 RNA, 5S ribosomal pseudogene 138 -1.8931 0.0000
63169 ENSG00000091664 SLC17A6 solute carrier family 17 member 6 -1.8930 0.0000
63168 ENSG00000178860 MSC musculin -1.8921 0.0000
63167 ENSG00000277739 5.8S ribosomal RNA -1.8911 0.0000
63166 ENSG00000227210 novel transcript -1.8911 0.0000
63165 ENSG00000169594 BNC1 basonuclin 1 -1.8911 0.0000
63164 ENSG00000214266 STARP1 steroidogenic acute regulatory protein pseudogene 1 -1.8908 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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