Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2481629

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2481629


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7010000000000000000000-772Sequence Read ArchiveSRP074598SRP074598_M102Single-cell DNA methylome sequencing of human preimplantation embryosMethylome8-cell embryoHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000283462 novel transcript 3.4846 0.0000
2 ENSG00000249089 AIG1P1 androgen induced 1 pseudogene 1 3.3219 0.0000
3 ENSG00000215353 C1QBPP1 complement C1q binding protein pseudogene 1 2.8074 0.0000
4 ENSG00000248915 ACTR6P1 ACTR6 pseudogene 1 2.8074 0.0003
5 ENSG00000254754 novel transcript 2.8074 0.0000
6 ENSG00000203565 novel transcript 2.6962 0.0000
7 ENSG00000260332 developmental pluripotency associated 3 (DPPA3) pseudogene 2.6962 0.0000
8 ENSG00000163734 CXCL3 C-X-C motif chemokine ligand 3 2.5850 0.0010
9 ENSG00000227261 YWHAZP7 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein zeta pseudogene 7 2.5850 0.0000
10 ENSG00000232303 DFFBP1 DNA fragmentation factor subunit beta pseudogene 1 2.5850 0.0010

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63173 ENSG00000162998 FRZB frizzled related protein -1.9892 0.0000
63172 ENSG00000279725 TEC -1.9885 0.0000
63171 ENSG00000136371 MTHFS methenyltetrahydrofolate synthetase -1.9882 0.0000
63170 ENSG00000255959 novel transcript, antisense to CCDC86 -1.9881 0.0000
63169 ENSG00000236809 SNX25P1 sorting nexin 25 pseudogene 1 -1.9879 0.0000
63168 ENSG00000119509 INVS inversin -1.9876 0.0000
63167 ENSG00000230864 novel transcript -1.9860 0.0001
63166 ENSG00000226443 GAPDHP32 glyceraldehyde 3 phosphate dehydrogenase pseudogene 32 -1.9859 0.0000
63165 ENSG00000202569 MIR146B microRNA 146b -1.9858 0.0000
63164 ENSG00000223791 UBE2E1-AS1 UBE2E1 antisense RNA 1 -1.9849 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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