Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2481630

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2481630


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7010000000000000000000-772Sequence Read ArchiveSRP074598SRP074598_M103Single-cell DNA methylome sequencing of human preimplantation embryosMethylome8-cell embryoHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000202103 RNU4-12P RNA, U4 small nuclear 12, pseudogene 3.7004 0.0000
2 ENSG00000242715 CCDC169 coiled-coil domain containing 169 3.0000 0.0001
3 ENSG00000250709 CCDC169-SOHLH2 CCDC169-SOHLH2 readthrough 3.0000 0.0001
4 ENSG00000200052 Y RNA 2.8716 0.0000
5 ENSG00000280281 TEC 2.7459 0.0000
6 ENSG00000225343 RPL21P66 ribosomal protein L21 pseudogene 66 2.5850 0.0016
7 ENSG00000232915 RNF14P1 RNF14 pseudogene 1 2.5850 0.0016
8 ENSG00000237593 ribosomal protein L17 (RPL17) pseudogene 2.5850 0.0016
9 ENSG00000249174 novel transcript 2.5850 0.0016
10 ENSG00000251946 RNU6-1023P RNA, U6 small nuclear 1023, pseudogene 2.5850 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63173 ENSG00000252892 RNU6-548P RNA, U6 small nuclear 548, pseudogene -1.8079 0.0000
63172 ENSG00000229108 LINC02587 long intergenic non-protein coding RNA 2587 -1.8078 0.0000
63171 ENSG00000177197 PCNPP5 PEST containing nuclear protein pseudogene 5 -1.8073 0.0000
63170 ENSG00000257629 microtubule-associated protein 1 light chain 3 alpha (MAP1LC3A) pseudogene -1.8072 0.0419
63169 ENSG00000264266 MIR4322 microRNA 4322 -1.8072 0.0000
63168 ENSG00000101438 SLC32A1 solute carrier family 32 member 1 -1.8067 0.0000
63167 ENSG00000197766 CFD complement factor D -1.8067 0.0000
63166 ENSG00000260668 emopamil binding protein-like (EBPL) pseudogene -1.8066 0.0004
63165 ENSG00000097033 SH3GLB1 SH3 domain containing GRB2 like, endophilin B1 -1.8061 0.0000
63164 ENSG00000118689 FOXO3 forkhead box O3 -1.8061 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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