Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2481631

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2481631


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7010000000000000000000-772Sequence Read ArchiveSRP074598SRP074598_M104Single-cell DNA methylome sequencing of human preimplantation embryosMethylome8-cell embryoHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000186119 OR5D18 olfactory receptor family 5 subfamily D member 18 3.1699 0.0000
2 ENSG00000230250 LINC01753 long intergenic non-protein coding RNA 1753 2.8074 0.0003
3 ENSG00000233079 LINC01755 long intergenic non-protein coding RNA 1755 2.8074 0.0003
4 ENSG00000196778 OR52K1 olfactory receptor family 52 subfamily K member 1 2.5850 0.0012
5 ENSG00000212538 Small nucleolar RNA U3 2.5850 0.0000
6 ENSG00000226037 LINC01040 long intergenic non-protein coding RNA 1040 2.5850 0.0000
7 ENSG00000232217 FTLP8 ferritin light chain pseudogene 8 2.5850 0.0000
8 ENSG00000206969 RNU6-1316P RNA, U6 small nuclear 1316, pseudogene 2.3585 0.0000
9 ENSG00000186306 OR10T2 olfactory receptor family 10 subfamily T member 2 2.3219 0.0045
10 ENSG00000203402 novel transcript 2.3219 0.0045

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63173 ENSG00000126790 L3HYPDH trans-L-3-hydroxyproline dehydratase -1.7689 0.0000
63172 ENSG00000274019 Neuroblastoma breakpoint family (NBPF) pseudogene -1.7687 0.0000
63171 ENSG00000148082 SHC3 SHC adaptor protein 3 -1.7685 0.0000
63170 ENSG00000145808 ADAMTS19 ADAM metallopeptidase with thrombospondin type 1 motif 19 -1.7683 0.0000
63169 ENSG00000103260 METRN meteorin, glial cell differentiation regulator -1.7683 0.0000
63168 ENSG00000235349 P antigen family, member 4 (prostate associated) (PAGE4) pseudogene -1.7682 0.0000
63167 ENSG00000259462 CPEB1-AS1 CPEB1 antisense RNA 1 -1.7678 0.0000
63166 ENSG00000275048 BSNDP1 BSND pseudogene 1 -1.7677 0.0000
63165 ENSG00000132170 PPARG peroxisome proliferator activated receptor gamma -1.7669 0.0000
63164 ENSG00000210839 RNU6ATAC5P RNA, U6atac small nuclear 5, pseudogene -1.7668 0.0003

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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