Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2481632

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2481632


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7010000000000000000000-772Sequence Read ArchiveSRP074598SRP074598_M105Single-cell DNA methylome sequencing of human preimplantation embryosMethylome8-cell embryoHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000185821 OR6C76 olfactory receptor family 6 subfamily C member 76 2.8074 0.0009
2 ENSG00000230162 CT45A11P cancer/testis antigen family 45 member A11, pseudogene 2.8074 0.0009
3 ENSG00000242097 UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 1 (GalNAc-T1) (GALNT1) pseudogene 2.8074 0.0009
4 ENSG00000279392 ubiquitin-conjugating enzyme E2L 3 (UBE2L3) pseudogene 2.8074 0.0000
5 ENSG00000224697 NEFMP1 neurofilament medium pseudogene 1 2.4037 0.0000
6 ENSG00000236440 COPRSP1 COPRS pseudogene 1 2.3850 0.0000
7 ENSG00000183035 CYLC1 cylicin 1 2.3219 0.0001
8 ENSG00000196383 OR4Q2 olfactory receptor family 4 subfamily Q member 2 (gene/pseudogene) 2.3219 0.0094
9 ENSG00000207139 Y RNA 2.3219 0.0001
10 ENSG00000226046 AP1S2P1 AP1S2 pseudogene 1 2.3219 0.0094

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63173 ENSG00000273293 novel transcript -1.7813 0.0000
63172 ENSG00000155111 CDK19 cyclin dependent kinase 19 -1.7810 0.0000
63171 ENSG00000266642 novel transcript, antisense to DHRS13 -1.7807 0.0000
63170 ENSG00000258991 DUX4L19 double homeobox 4 like 19 (pseudogene) -1.7798 0.0000
63169 ENSG00000148082 SHC3 SHC adaptor protein 3 -1.7796 0.0000
63168 ENSG00000182307 C8orf33 chromosome 8 open reading frame 33 -1.7787 0.0000
63167 ENSG00000235332 RPSAP76 ribosomal protein SA pseudogene 76 -1.7785 0.0000
63166 ENSG00000240053 LY6G5B lymphocyte antigen 6 family member G5B -1.7773 0.0000
63165 ENSG00000224157 HCG14 HLA complex group 14 -1.7773 0.0000
63164 ENSG00000163527 STT3B STT3 oligosaccharyltransferase complex catalytic subunit B -1.7772 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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